PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY66531.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 290aa MW: 32116 Da PI: 9.1169

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY66531.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30	8.9e-10	16	35	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCkyG++C+++H++ TEY66531.1 16 HYLKTGTCKYGSTCRYHHPK 35 8*****************96 PP
2	zf-CCCH	33.6	6.7e-11	55	78	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f++r+G CkyG CkF+H++ TEY66531.1 55 KPCPFYMRMGLCKYGYACKFHHPQ 78 69********************97 PP
3	zf-CCCH	38.7	1.7e-12	177	202	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+++G CkyG+ Ck++H++ TEY66531.1 177 DQPECRYFMEYGSCKYGSECKYHHPR 202 689*********************96 PP
4	zf-CCCH	34.1	4.7e-11	222	248	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++ +G+C+yG C+F H++ TEY66531.1 222 PGQPVCSYYSLYGICNYGTACRFDHPM 248 5789*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MFRWLVLILI NMFFQHYLKT GTCKYGSTCR YHHPKDRQAD FLLNMLGLPM RQDAKPCPFY 60 MRMGLCKYGY ACKFHHPQPT LAASNVLPVM GPVYGSGGSA VVPSSGVSSA SISGASLSKA 120 TYFASSLPQS YLPLFLPQSQ GWNTYMGNAS PLPVSSVLTG PVPNRQQSVL YLPERPDQPE 180 CRYFMEYGSC KYGSECKYHH PREKLSQLVS TSIVPLGLPL RPGQPVCSYY SLYGICNYGT 240 ACRFDHPMDR HNYAYGLSVP PTAFAYPSPA PYQRIASLVP VADVSPTKSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-55	C3H family protein