PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY70899.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

LSD

Protein Properties

Length: 183aa MW: 19104.1 Da PI: 7.7729

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY70899.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.7	8.2e-13	13	37	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrt+L YP GA++V+Ca+C+ V TEY70899.1 13 CSGCRTVLLYPSGATNVCCAICNMV 37 ***********************98 PP
2	zf-LSD1	40.8	3.6e-13	52	76	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ rGA+sVRC++C+tV TEY70899.1 52 CGGCRTLLMHARGATSVRCSCCHTV 76 ************************9 PP
3	zf-LSD1	48.9	1.1e-15	93	117	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ TEY70899.1 93 CGNCHTMLMYPAGAPSVKCAICHFI 117 ***********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence
MYGIDDMQSQ VVCSGCRTVL LYPSGATNVC CAICNMVTSV PPPGMEMAQL ICGGCRTLLM 60 HARGATSVRC SCCHTVNLVP AATPPNNVAH VNCGNCHTML MYPAGAPSVK CAICHFITNV 120 NMADTRVPIP VNRPVGNSNS APTQSTSTVT TAHSHNQTVV VQNPMTVDES GKLVSNVVVG 180 VTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	3e-67	LSD family protein