PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY72187.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 359aa MW: 38937.2 Da PI: 6.5014

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY72187.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.4	2.7e-09	97	121	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk +lC+ f++ GtC+y +C+FaH TEY72187.1 97 YKSKLCCKFRA-GTCPYVTTCNFAHN 121 899******.***********6 PP
2	zf-CCCH	17.5	7.5e-06	173	193	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ C+yG++C+F H+ TEY72187.1 173 CKKFYTEEGCPYGENCTFLHD 193 99999999************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MDMHRDNGFS SGNVVQIICG NGGSENWGPG SCDQAIWATE DDYGMWSGEA SGDTNSNSNY 60 EGMPSQDRSG SEPPSKRSKS GDLMSSNRSK AIGKMFYKSK LCCKFRAGTC PYVTTCNFAH 120 NIEELRKPPP NWQEIVDAHE EDRPVSSEPR EEFQIPIVGA TEETQRSNKG RHCKKFYTEE 180 GCPYGENCTF LHDEQSKTRE SVAISLGPGS SASGYGNNAN SVALKLKQIG KQGFVISGSL 240 PGIARLAESA ISPMEQQMCG RIHHCSVSSP GSCTVQLHNH GGLDSEVKDA STQGEVATKT 300 SVDSILASVT SVPYSNGYHL GVPAQRLPNV VQMTGHRPTQ KWKGPDKISK IHGDWIDDL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MDMHRDNGFS SGNVVQIICG NGGSENWGPG SCDQAIWATE DDYGMWSGEA SGDTNSNSNY  60
EGMPSQDRSG SEPPSKRSKS GDLMSSNRSK AIGKMFYKSK LCCKFRAGTC PYVTTCNFAH  120
NIEELRKPPP NWQEIVDAHE EDRPVSSEPR EEFQIPIVGA TEETQRSNKG RHCKKFYTEE  180
GCPYGENCTF LHDEQSKTRE SVAISLGPGS SASGYGNNAN SVALKLKQIG KQGFVISGSL  240
PGIARLAESA ISPMEQQMCG RIHHCSVSSP GSCTVQLHNH GGLDSEVKDA STQGEVATKT  300
SVDSILASVT SVPYSNGYHL GVPAQRLPNV VQMTGHRPTQ KWKGPDKISK IHGDWIDDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-84	C3H family protein