PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY72799.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 270aa MW: 30251.3 Da PI: 8.0218

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY72799.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.5	9.5e-08	46	71	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C f++ G C++ ++C FaH++ TEY72799.1 46 YKTRPCFQFRA-GSCPFAENCEFAHSM 71 9***97777.***********95 PP
2	zf-CCCH	29.8	1.1e-09	166	192	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +k +lC + tG C yG +C+FaHg+ TEY72799.1 166 WKARLCTKWDLTGMCVYGKNCTFAHGF 192 7899*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MDDMCEKEMP VDPNLTLNRS ERSFQFDVES DPPNKRAKNA IEKMLYKTRP CFQFRAGSCP 60 FAENCEFAHS MEELRELPHS HKEEPMRLSE QPREVSQIPV VGLNEVKHRP SSRQLCKGFL 120 SAAGCQNGEK CLLIHNEHYM ERKSAAICLL PGSGSGFKSS GSSSNWKARL CTKWDLTGMC 180 VYGKNCTFAH GFAELQHYRG RQEKKEDSGS SALGGNQVAS IPAKACVGHV PYAYHVGVPP 240 RRLSGEIAIQ NWKGPDKISK IYGDWIDDLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	3e-40	C3H family protein