PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY73903.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 338aa MW: 36201.5 Da PI: 10.0029

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY73903.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.7	7.5e-07	144	169	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+ d+C+FaHg+ TEY73903.1 144 KTKLCNKFNSAEGCKFNDKCHFAHGE 169 89**********************96 PP
2	zf-CCCH	35.2	2.1e-11	305	329	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f++ G C +G+rC+FaHg TEY73903.1 305 FKTKLCENFSK-GSCTFGERCHFAHG 329 69*******.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MILFRWFWNR IFAFFFVLSL SFGAMDIRKR GRVEFDPNAN GGPKRSKPEL DSVSGGIGSK 60 TKPCTKFFSI SGVLHLKNVP QLYNLLFFCS MAGCPFGENC HFLHFVPGGF KAVAQMMNLS 120 PAPTLKTTTG PPPNQNGSSS VAVKTKLCNK FNSAEGCKFN DKCHFAHGEK ELGRPIAHSQ 180 EDSRAVGPVT PYFGARAEPP VQGLAASFGA SATAKISVDA SLAGAIIGKA GVNSKQICRQ 240 TGAKLSIRDH ETDPSLRNIE LEGTFEQIKQ ASTMVRELIV SIGSSNTPAK TLGGGGGPPT 300 PGSNFKTKLC ENFSKGSCTF GERCHFAHGA AELRKTGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	6e-82	C3H family protein