PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY73933.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 708aa MW: 77485.1 Da PI: 6.6239

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY73933.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	281	301	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg TEY73933.1 281 PCPDFRK-GACRRGDMCEYAHG 301 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence
MSFSFLNVET KDTFTSLLEH AANNDLEGFK KFIGCNPSSV DEVGLWYGRQ NGSSQMVLQH 60 LTPLMVAATY GSIDVLKLIV SLPEVDVNRN CGVDNSTALH CAASGGSVNA VDAVKLLLAS 120 GADPNLTDAN GRRPLDVVVV SPKSQATKYS IQMMLTMGTS FEEEHHLRVL IGASSLDSPP 180 LSPSLASGSP RSPELVPSPE GMKSNDLPAL PAPEKKEYPV DPSLPDIKNS IYSTDEFRMF 240 SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV PCPDFRKGAC RRGDMCEYAH 300 GVFECWLHPA QYRTRLCKDG TSCNRRVCFF AHTQEELRPL YVSTGSAVPS PRSNASAANA 360 MDFAAAMSLL PGSPSSVPAM SPSPFTPPMS PSANSVSNPS WQFQQNVPAL HLPGSNFQSS 420 RLRSSLHARD IPFEDMNAFG DMDLQKQQQL LNELPHLSQP SISANMMNRS VRPKTLTPSN 480 LEEIFSVESS SPRYSDQTLA STVFSPTHKS AVLNQFQQQQ QSMLSPIKTT FSPRNVDHTL 540 LQGPFGVPSS GRMSPRAVEP ISPMSARVSM LARQEKQHQQ FRSLSSRDLG SNAAAAVASM 600 EGNWSKWGSP NGQPEWGVNA DDFGKLKRSS SFDLLNHGEE PDLSWVHSLV KESPQEMKEK 660 SVPHVSGATG TATSSGEGAH LNNEIEQVDQ SVLGAWLEQM QLDQLMAQ

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence

MSFSFLNVET KDTFTSLLEH AANNDLEGFK KFIGCNPSSV DEVGLWYGRQ NGSSQMVLQH  60
LTPLMVAATY GSIDVLKLIV SLPEVDVNRN CGVDNSTALH CAASGGSVNA VDAVKLLLAS  120
GADPNLTDAN GRRPLDVVVV SPKSQATKYS IQMMLTMGTS FEEEHHLRVL IGASSLDSPP  180
LSPSLASGSP RSPELVPSPE GMKSNDLPAL PAPEKKEYPV DPSLPDIKNS IYSTDEFRMF  240
SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV PCPDFRKGAC RRGDMCEYAH  300
GVFECWLHPA QYRTRLCKDG TSCNRRVCFF AHTQEELRPL YVSTGSAVPS PRSNASAANA  360
MDFAAAMSLL PGSPSSVPAM SPSPFTPPMS PSANSVSNPS WQFQQNVPAL HLPGSNFQSS  420
RLRSSLHARD IPFEDMNAFG DMDLQKQQQL LNELPHLSQP SISANMMNRS VRPKTLTPSN  480
LEEIFSVESS SPRYSDQTLA STVFSPTHKS AVLNQFQQQQ QSMLSPIKTT FSPRNVDHTL  540
LQGPFGVPSS GRMSPRAVEP ISPMSARVSM LARQEKQHQQ FRSLSSRDLG SNAAAAVASM  600
EGNWSKWGSP NGQPEWGVNA DDFGKLKRSS SFDLLNHGEE PDLSWVHSLV KESPQEMKEK  660
SVPHVSGATG TATSSGEGAH LNNEIEQVDQ SVLGAWLEQM QLDQLMAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein