PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY76877.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

LSD

Protein Properties

Length: 173aa MW: 17689.6 Da PI: 8.1721

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY76877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.8	7.3e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L YPrGA++V+Ca+C+ + TEY76877.1 7 CTGCRTVLLYPRGATNVCCAICNVI 31 9*********************986 PP
2	zf-LSD1	39	1.3e-12	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ rGA sVRC++C+tV TEY76877.1 46 CGGCRTLLMHARGAASVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	25.9	1.6e-08	98	113	1	16
zf-LSD1 1 CggCrtlLsYPrGAps 16 Cg+C+t+L+YP+GAps TEY76877.1 98 CGNCHTMLMYPAGAPS 113 ***************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence
MQSQIVCTGC RTVLLYPRGA TNVCCAICNV ITAVPPAGME MAQLICGGCR TLLMHARGAA 60 SVRCSCCHTV NLVPGPAAAA PLPTTPPPAS SNIAHVNCGN CHTMLMYPAG APSNGDARVP 120 IPVHRPAGIA TSASPPTYLA PSQSHNQTVV VHNPMTVDES GKLVNNVVVG VTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	6e-50	LSD family protein