PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY84522.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 354aa MW: 39621.8 Da PI: 8.5474

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY84522.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	48.1	1.9e-15	269	294	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yG++C+FaHg TEY84522.1 269 FKTELCNKWQQTGACPYGANCQFAHG 294 79***********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MKSHVFCLFM AKQSSAQNSY APRLGTMQRE ISISTGISTM PFNGEFDFDL NPLMYSSIFP 60 PNHSSSFENN YLNDDGSSNF SSAGGEKALA PCLPQFQQLL SQDLTNRHRM VLTRLSSAAK 120 QAQTLRQENV NLKMANLDLN NRLNLLLNSP QPFRGVDAHP RPGLENLDDR VRKMSVEEEG 180 TSENEAVVQS PTSVMDSGQG GLGEKRVHLP KSISVRSIGY LKAARDYASS SGPKVVKALN 240 ENNGTQKVYV KGDKKEQAVE LEVYNQGMFK TELCNKWQQT GACPYGANCQ FAHGIAELRP 300 VLRHPRYKTE VCRMVLNGVP CPYGHRCHFR HTLTEEEELV RAMNTNTLQP MNYR

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MKSHVFCLFM AKQSSAQNSY APRLGTMQRE ISISTGISTM PFNGEFDFDL NPLMYSSIFP  60
PNHSSSFENN YLNDDGSSNF SSAGGEKALA PCLPQFQQLL SQDLTNRHRM VLTRLSSAAK  120
QAQTLRQENV NLKMANLDLN NRLNLLLNSP QPFRGVDAHP RPGLENLDDR VRKMSVEEEG  180
TSENEAVVQS PTSVMDSGQG GLGEKRVHLP KSISVRSIGY LKAARDYASS SGPKVVKALN  240
ENNGTQKVYV KGDKKEQAVE LEVYNQGMFK TELCNKWQQT GACPYGANCQ FAHGIAELRP  300
VLRHPRYKTE VCRMVLNGVP CPYGHRCHFR HTLTEEEELV RAMNTNTLQP MNYR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	1e-59	C3H family protein