PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY85032.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 507aa MW: 54697.8 Da PI: 8.4917

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY85032.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36	1.2e-11	152	176	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C f+++t tCk+G++CkF H+ TEY85032.1 152 GEKDCAFYMQTRTCKFGESCKFDHP 176 7889********************9 PP
2	zf-CCCH	32.4	1.6e-10	204	228	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+ff++t Ck+G rCkF+H++ TEY85032.1 204 EIDCPFFLKTQKCKFGIRCKFNHPK 228 568********************96 PP
3	zf-CCCH	33.9	5.2e-11	251	274	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+ff +tG Ck+G++CkF+H+ TEY85032.1 251 EPTCSFFVKTGKCKFGSTCKFHHP 274 689********************8 PP
4	zf-CCCH	35.9	1.3e-11	320	345	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++e C+f++rtG CkyG +C ++H+ TEY85032.1 320 PGEEDCPFYLRTGSCKYGTTCLYNHP 345 5899*********************9 PP
5	zf-CCCH	40	6.6e-13	404	428	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C++++++GtCkyG++CkF+H+ TEY85032.1 404 GQQECDYYMKNGTCKYGNNCKFHHP 428 6789********************8 PP
6	zf-CCCH	40.7	3.8e-13	461	483	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++tG CkyG++CkF H+p TEY85032.1 461 NCPYYMKTGACKYGATCKFDHPP 483 6********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MSNHLYGYTS TTYGGGAANS RSAADAYTPS DASLLATSSR YLAADQLSSS SSLSSSLLYN 60 PESYSRIPAL PSTTSLHSYR PPGVDLAAAG VPTDPLYAGV KRTSAESLYH QTLLGAYNKI 120 GQTDAWYSSN PLAKRTRYES TGNFPIYPQR PGEKDCAFYM QTRTCKFGES CKFDHPVWVP 180 EGGIPDWKEI PLVSSEALPK RPGEIDCPFF LKTQKCKFGI RCKFNHPKDS IQPAGAPEEG 240 GVSVLPERPS EPTCSFFVKT GKCKFGSTCK FHHPNAVLIQ SIVEENINGL QKNILGENKA 300 VQTSFAPALL HNSKGLPIRP GEEDCPFYLR TGSCKYGTTC LYNHPDRYVI NPQAAIASSL 360 LTSPSARYGL GVAAPAASLL PNFDPRLSQT MVGLAATIFP QRPGQQECDY YMKNGTCKYG 420 NNCKFHHPID RSAPTASATG SPQQNVKLTL AGLPRREGAI NCPYYMKTGA CKYGATCKFD 480 HPPPGEVMAA AMATASAVGE GKQNGDV

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MSNHLYGYTS TTYGGGAANS RSAADAYTPS DASLLATSSR YLAADQLSSS SSLSSSLLYN  60
PESYSRIPAL PSTTSLHSYR PPGVDLAAAG VPTDPLYAGV KRTSAESLYH QTLLGAYNKI  120
GQTDAWYSSN PLAKRTRYES TGNFPIYPQR PGEKDCAFYM QTRTCKFGES CKFDHPVWVP  180
EGGIPDWKEI PLVSSEALPK RPGEIDCPFF LKTQKCKFGI RCKFNHPKDS IQPAGAPEEG  240
GVSVLPERPS EPTCSFFVKT GKCKFGSTCK FHHPNAVLIQ SIVEENINGL QKNILGENKA  300
VQTSFAPALL HNSKGLPIRP GEEDCPFYLR TGSCKYGTTC LYNHPDRYVI NPQAAIASSL  360
LTSPSARYGL GVAAPAASLL PNFDPRLSQT MVGLAATIFP QRPGQQECDY YMKNGTCKYG  420
NNCKFHHPID RSAPTASATG SPQQNVKLTL AGLPRREGAI NCPYYMKTGA CKYGATCKFD  480
HPPPGEVMAA AMATASAVGE GKQNGDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-178	C3H family protein