PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY91217.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 744aa MW: 80741.7 Da PI: 6.3934

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY91217.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	322	342	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg TEY91217.1 322 PCPDFRK-GACRRGDMCEYAHG 342 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence
MVNDIGGIAV DRSMCSGPEQ SNHNSCTTQG AAINQSSMKD SNNLFVETDD SLSSLLEFAA 60 NNYVESFRRL IEVNLSVVDA AGLWYVRNKG SKQINLEERT PLMVAATYGS VDVLKLIVAL 120 PEVYLNKSCG VNKWTALHCA AFGGSVHALD VVKLLLSAGA DPNIEDARGL RPVDVIVAPP 180 KLPGAKAALE DLLMNTISDA SVGECNLWVT ISGSNASSPV LSSSPESRSA CSLSDSVSSP 240 TAPKFVDPAA NSVSEKKQYP VDPSLPDIRN SIYSTDEFRM FSFKIRPCSR AYSHDWTECP 300 FVHPGENARR RDPRKYHYSC VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD 360 GTSCARQVCF FAHTQEELRP LYVSTGSGVP SPRSVASTAS FMDMAAALSL LPGSPTSQSV 420 MSPFAFNQIM SPTANVMSHS SSGAWTQPNV PTLSLPGSNL QSSRLRSSLN ARDIPPEDLN 480 TLRDYDSQQL ILNDMACFSQ PRPNSAMLGS GRSQRTLTPS NLEDLFSAEI TSSPRLSDQA 540 ATFGAFSPSH KSADLNQFQP QQNILSPINT NVFSPRNVEP PLLQASFGVS SPRMSPRSLE 600 PGSPMSARLS AFAQRERQQQ MQMRSLSSRE LGSNHTPVVG SPTSAWSKWG PVNAKVDWSV 660 SAEHEGCGVK RQSSFDRRAD GEDPDLSWVQ SLVKESPPEM MDKAAATGAA PSGECLKPNP 720 QTDSADHTVL GAWLDQMRLD QLVV

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence

MVNDIGGIAV DRSMCSGPEQ SNHNSCTTQG AAINQSSMKD SNNLFVETDD SLSSLLEFAA  60
NNYVESFRRL IEVNLSVVDA AGLWYVRNKG SKQINLEERT PLMVAATYGS VDVLKLIVAL  120
PEVYLNKSCG VNKWTALHCA AFGGSVHALD VVKLLLSAGA DPNIEDARGL RPVDVIVAPP  180
KLPGAKAALE DLLMNTISDA SVGECNLWVT ISGSNASSPV LSSSPESRSA CSLSDSVSSP  240
TAPKFVDPAA NSVSEKKQYP VDPSLPDIRN SIYSTDEFRM FSFKIRPCSR AYSHDWTECP  300
FVHPGENARR RDPRKYHYSC VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD  360
GTSCARQVCF FAHTQEELRP LYVSTGSGVP SPRSVASTAS FMDMAAALSL LPGSPTSQSV  420
MSPFAFNQIM SPTANVMSHS SSGAWTQPNV PTLSLPGSNL QSSRLRSSLN ARDIPPEDLN  480
TLRDYDSQQL ILNDMACFSQ PRPNSAMLGS GRSQRTLTPS NLEDLFSAEI TSSPRLSDQA  540
ATFGAFSPSH KSADLNQFQP QQNILSPINT NVFSPRNVEP PLLQASFGVS SPRMSPRSLE  600
PGSPMSARLS AFAQRERQQQ MQMRSLSSRE LGSNHTPVVG SPTSAWSKWG PVNAKVDWSV  660
SAEHEGCGVK RQSSFDRRAD GEDPDLSWVQ SLVKESPPEM MDKAAATGAA PSGECLKPNP  720
QTDSADHTVL GAWLDQMRLD QLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein