PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY91300.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 764aa MW: 88972.3 Da PI: 6.8139

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY91300.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.1	6.1e-08	224	243	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G+rC+++H TEY91300.1 224 CPFHLKTGACRFGSRCSRIH 243 *******************9 PP
2	zf-CCCH	18.1	4.8e-06	355	380	3	26
S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 3 telCrffartG..tCkyGdrCkFaHg 26 ++C +++ C++G C+F+H+ TEY91300.1 355 GAICGELMKSKlkNCSRGTACNFIHC 380 5789999999999************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence
MSQQKITVEE DVTATDTAEC AAGKRKERRK AAKKEKRKNK RKELAEIARR EEEVRLNDPE 60 EQRRIQAEEE QERLRAEEER KHFEETERKI LEAWERKKAL EEKEEQERRR RAEEEERLSK 120 QNQVMFYQVG HETEVDDDVW EYVEEGPPEI IWQGNEIIVK KKKVRVKKKD TDQHVMKEDP 180 NRPTSNPLPP HSEAFTDNKT AQQLLDTVAQ ETPNFGTEQD KSHCPFHLKT GACRFGSRCS 240 RIHFYPDKSC TLLIKNMYNG PGLAWEQDEG LEHTDEEVEC AYEEFYEDVH TEFLKFGEII 300 NFKVCRNGSS HLRGNVYVHY NSLDSAVLSY QSVNGRYFAG KQLQCEFVGL TRWRGAICGE 360 LMKSKLKNCS RGTACNFIHC FRNPGGDYGW ADWDKPPPRY WVKEMAALFG YPDESGSHKN 420 TEHGSTRLIS YPAPVENQSR TDCFAFGASR EMQPAIFPFH SSVRSRSRTS EFSSNSRNYS 480 DDDLRRSETR RHHKGSDRKH SEKLDYEHPD ISKPSSNLSP AYRKRKLESR DGTSNKMNRQ 540 ETDPDENMHE NDLDSYHHER SRSKRHREKE CHGAGSKGDG WIEDSREPLN QSGTAKGKDP 600 RQQNKVSTSP AEQRNCRGTT THSSDLNGEC SDGERHGPHL YGEESPRSYG SEEFEDRKKR 660 RRTHKLKNSS NWDNSDRGNV EDENDSESLR DSRRSYRTSD CSSSKYHRRQ RAERGESERQ 720 ISAHQEKLER RRGSIDYLEA IRSHATNESD DERGRWEPDE GDSA

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence

MSQQKITVEE DVTATDTAEC AAGKRKERRK AAKKEKRKNK RKELAEIARR EEEVRLNDPE  60
EQRRIQAEEE QERLRAEEER KHFEETERKI LEAWERKKAL EEKEEQERRR RAEEEERLSK  120
QNQVMFYQVG HETEVDDDVW EYVEEGPPEI IWQGNEIIVK KKKVRVKKKD TDQHVMKEDP  180
NRPTSNPLPP HSEAFTDNKT AQQLLDTVAQ ETPNFGTEQD KSHCPFHLKT GACRFGSRCS  240
RIHFYPDKSC TLLIKNMYNG PGLAWEQDEG LEHTDEEVEC AYEEFYEDVH TEFLKFGEII  300
NFKVCRNGSS HLRGNVYVHY NSLDSAVLSY QSVNGRYFAG KQLQCEFVGL TRWRGAICGE  360
LMKSKLKNCS RGTACNFIHC FRNPGGDYGW ADWDKPPPRY WVKEMAALFG YPDESGSHKN  420
TEHGSTRLIS YPAPVENQSR TDCFAFGASR EMQPAIFPFH SSVRSRSRTS EFSSNSRNYS  480
DDDLRRSETR RHHKGSDRKH SEKLDYEHPD ISKPSSNLSP AYRKRKLESR DGTSNKMNRQ  540
ETDPDENMHE NDLDSYHHER SRSKRHREKE CHGAGSKGDG WIEDSREPLN QSGTAKGKDP  600
RQQNKVSTSP AEQRNCRGTT THSSDLNGEC SDGERHGPHL YGEESPRSYG SEEFEDRKKR  660
RRTHKLKNSS NWDNSDRGNV EDENDSESLR DSRRSYRTSD CSSSKYHRRQ RAERGESERQ  720
ISAHQEKLER RRGSIDYLEA IRSHATNESD DERGRWEPDE GDSA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	42	KRKERRKAAKKEKRKNKRK
2	33	41	KKEKRKNKR
3	96	111	RKKALEEKEEQERRRR
4	560	565	RSRSKR
5	658	664	KKRRRTH
6	659	665	KKRRRTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-138	C3H family protein