PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1AG018130.3
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 24165.4 Da    PI: 10.3815
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1AG018130.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.94.1e-3153103151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                       krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs +g+lyeys+
  TRIDC1AG018130.3  53 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSGRGRLYEYSN 103
                       79***********************************************95 PP
2K-box103.52.6e-34120216399
             K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                       +ss   ++e +a+++qqe+akLk++i +Lq+++R l+G+ + ++s+++L+qLe +L+k+l kiR++Knell+++ie++q++e elq++n  Lr
  TRIDC1AG018130.3 120 TSSAGTVAEINAQHYQQESAKLKQQITTLQNSNRTLIGDTMATMSHRDLKQLEGRLDKGLGKIRARKNELLCAEIEYMQRREMELQNNNFFLR 212
                       4455559999*********************************************************************************** PP

             K-box  96 kkle 99 
                       +k+ 
  TRIDC1AG018130.3 213 EKVS 216
                       *985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
PKKGPRSSSS RESGIFTAQP EIQPVKESAS PGSGSGSAGG AAEKMGRGRI EIKRIENTTN  60
RQVTFCKRRN GLLKKAYELS VLCDAEVALI VFSGRGRLYE YSNNSVKATI ERYKKATSDT  120
SSAGTVAEIN AQHYQQESAK LKQQITTLQN SNRTLIGDTM ATMSHRDLKQ LEGRLDKGLG  180
KIRARKNELL CAEIEYMQRR EMELQNNNFF LREKVST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.15e-93MIKC_MADS family protein