PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG018130.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MIKC_MADS

Protein Properties

Length: 247aa MW: 27747.2 Da PI: 10.6908

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG018130.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.6	5.2e-31	93	143	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs +g+lyeys+ TRIDC1AG018130.5 93 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSGRGRLYEYSN 143 79***********************************************95 PP
2	K-box	88.4	1.4e-29	160	244	3	87
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 +ss ++e +a+++qqe+akLk++i +Lq+++R l+G+ + ++s+++L+qLe +L+k+l kiR++Knell+++ie++q++ +++ TRIDC1AG018130.5 160 TSSAGTVAEINAQHYQQESAKLKQQITTLQNSNRTLIGDTMATMSHRDLKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRVRNT 244 4455559999***********************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MATTGWGNSR YARRGRDSAR GSGAYSLRKP QRERHHQGEE MDHSLSFSSY LQRRVQEVAA 60 QENRVKESAS PGSGSGSAGG AAEKMGRGRI EIKRIENTTN RQVTFCKRRN GLLKKAYELS 120 VLCDAEVALI VFSGRGRLYE YSNNSVKATI ERYKKATSDT SSAGTVAEIN AQHYQQESAK 180 LKQQITTLQN SNRTLIGDTM ATMSHRDLKQ LEGRLDKGLG KIRARKNELL CAEIEYMQRR 240 VRNTIKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	2e-87	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG018130.5