PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG038160.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 338aa MW: 37060 Da PI: 8.4267

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG038160.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	113.3	1.4e-35	48	123	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCead+ e+k yh+rh+vC ++++++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k TRIDC1AG038160.3 48 RCQVPGCEADIRELKGYHKRHRVCLRCAHSSAVMIDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 123 6************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
EEVAAEALAG PRKKPRAASR GSSGAVVKTG GAGGGSGVAG RGGAAEMRCQ VPGCEADIRE 60 LKGYHKRHRV CLRCAHSSAV MIDGVQKRYC QQCGKFHILL DFDEDKRSCR RKLERHNKRR 120 RRKPDSKGTL EKEIDEQLDL SADGSGSGEI REENIDGASC DMLETVLSNK VLDRETPMGS 180 EDALSSPTCT QLSLQNDRSK SIVTFAASAE ACLGAKQENA KLTNSPVHDS KSAYSSSCPT 240 GRISFKLYDW NPAEFPRRLR NQIFEWLSSM PVELEGYIRP GCTILTVFIA MPQHMWDKLS 300 EDTANLVRNL VNAPSSLLLG KGAFFVHANN TIFQVLKD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	124	KRSCRRKLERHNKRRRRKP
2	110	122	RRKLERHNKRRRR
3	117	124	NKRRRRKP
4	118	123	KRRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	5e-87	SBP family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG038160.3