PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG041580.7

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 61aa MW: 6138.24 Da PI: 7.6921

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG041580.7	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	46.4	6.5e-15	8	32	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C tV TRIDC1AG041580.7 8 CSGCRNLLMYPAGATSVCCAVCSTV 32 ***********************99 PP
2	zf-LSD1	26.8	8.6e-09	47	61	1	15
zf-LSD1 1 CggCrtlLsYPrGAp 15 CggC+tlL+Y rGA+ TRIDC1AG041580.7 47 CGGCHTLLMYIRGAT 61 **************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 61 aa Download sequence
GAQSQLVCSG CRNLLMYPAG ATSVCCAVCS TVTAVPAPGT EMAQLVCGGC HTLLMYIRGA 60 T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	7e-22	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG041580.7