PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG042470.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 551aa MW: 61436.1 Da PI: 7.6204

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG042470.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.4e-17	18	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk++a+ ++ Rt+ qc +rwqk+l TRIDC1AG042470.1 18 KGGWTPEEDETLRKAVAVFKGKNWKRVAEFFP-DRTEVQCLHRWQKVL 64 688***************************.**********986 PP
2	Myb_DNA-binding	55.4	1.4e-17	70	116	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ +++ vk++G+ W+ Iar + gR +kqc++rw+++l TRIDC1AG042470.1 70 KGPWTQEEDDTIIQKVKEHGPTKWSVIARSLH-GRIGKQCRERWHNHL 116 79****************************.***********97 PP
3	Myb_DNA-binding	59.8	6e-19	122	164	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT eE++ lvda++++G++ W+ Ia+ ++ gRt++++k++w+ TRIDC1AG042470.1 122 KEAWTFEEEQVLVDAHRMHGNK-WAEIAKLLP-GRTDNSIKNHWN 164 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence
ADSGSSRRRI SGPVRRAKGG WTPEEDETLR KAVAVFKGKN WKRVAEFFPD RTEVQCLHRW 60 QKVLDPELIK GPWTQEEDDT IIQKVKEHGP TKWSVIARSL HGRIGKQCRE RWHNHLDPQI 120 RKEAWTFEEE QVLVDAHRMH GNKWAEIAKL LPGRTDNSIK NHWNSSVRKR LDEYDTGAAR 180 NVPVHVSHND LKQPAIALPA ENYIDLNEVP NISLRNHSGI VDHSDPTHSP RVCSLKNIKG 240 CSDFLSLSMP TAQPVTSCQA SAADDSAVAL AIMGMKMDSG RDKDIELNFV CQKGLQINLS 300 NEKGLEIDPV TAKPDGREST LVKEAQSFGS LCYQIPKLED IDLVRSPVLS RHHGSEHGVD 360 GFQSPTGYAT PSPTDGKQSD QLSVESILKS AAENFPGTPS ILRRRKRDKP TPSQDTDFKI 420 DANSDCFDTP KANCTTYSPH SFKTAPFLSL GRLDDQQLPS VLGKFDVSPT YRLRSKRMAV 480 LKTVEKHLDF SADAMDTCDM VGTLKSSCRN TESINASSDI SSAHDRRING HMIGLETLTS 540 DFAYTTKLDA T

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence

ADSGSSRRRI SGPVRRAKGG WTPEEDETLR KAVAVFKGKN WKRVAEFFPD RTEVQCLHRW  60
QKVLDPELIK GPWTQEEDDT IIQKVKEHGP TKWSVIARSL HGRIGKQCRE RWHNHLDPQI  120
RKEAWTFEEE QVLVDAHRMH GNKWAEIAKL LPGRTDNSIK NHWNSSVRKR LDEYDTGAAR  180
NVPVHVSHND LKQPAIALPA ENYIDLNEVP NISLRNHSGI VDHSDPTHSP RVCSLKNIKG  240
CSDFLSLSMP TAQPVTSCQA SAADDSAVAL AIMGMKMDSG RDKDIELNFV CQKGLQINLS  300
NEKGLEIDPV TAKPDGREST LVKEAQSFGS LCYQIPKLED IDLVRSPVLS RHHGSEHGVD  360
GFQSPTGYAT PSPTDGKQSD QLSVESILKS AAENFPGTPS ILRRRKRDKP TPSQDTDFKI  420
DANSDCFDTP KANCTTYSPH SFKTAPFLSL GRLDDQQLPS VLGKFDVSPT YRLRSKRMAV  480
LKTVEKHLDF SADAMDTCDM VGTLKSSCRN TESINASSDI SSAHDRRING HMIGLETLTS  540
DFAYTTKLDA T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	403	409	RRRKRDK
2	403	410	RRRKRDKP
3	404	410	RRRKRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	6e-97	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG042470.1