PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG042470.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 524aa MW: 58456.6 Da PI: 6.6738

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG042470.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	43	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ +++ vk++G+ W+ Iar + gR +kqc++rw+++l TRIDC1AG042470.4 43 KGPWTQEEDDTIIQKVKEHGPTKWSVIARSLH-GRIGKQCRERWHNHL 89 79****************************.***********97 PP
2	Myb_DNA-binding	59.9	5.7e-19	95	137	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT eE++ lvda++++G++ W+ Ia+ ++ gRt++++k++w+ TRIDC1AG042470.4 95 KEAWTFEEEQVLVDAHRMHGNK-WAEIAKLLP-GRTDNSIKNHWN 137 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
TPEEQDETLR KAVAVFKAEF FPDRTEVQCL HRWQKVLDPE LIKGPWTQEE DDTIIQKVKE 60 HGPTKWSVIA RSLHGRIGKQ CRERWHNHLD PQIRKEAWTF EEEQVLVDAH RMHGNKWAEI 120 AKLLPGRTDN SIKNHWNSSV RKRLDEYDTG AARNVPVHVS HNDLKQPAIA LPAENYIDLN 180 EVPNISLRNH SGIVDHSDPT HSPRVCSLKN IKGCSDFLSL SMPTAQPVTS CQASAADDSA 240 VALAIMGMKM DSGRDKDIEL NFVCQKGLQI NLSNEKGLEI DPVTAKPDGR ESTLVKEAQS 300 FGSLCYQIPK LEDIDLVRSP VLSRHHGSEH GVDGFQSPTG YATPSPTDGK QSDQLSVESI 360 LKSAAENFPG TPSILRRRKR DKPTPSQDTD FKIDANSDCF DTPKANCTTY SPHSFKTAPF 420 LSLGRLDDQQ LPSVLGKFDV SPTYRLRSKR MAVLKTVEKH LDFSADAMDT CDMVGTLKSS 480 CRNTESINAS SDISSAHDRR INGHMIGLET LTSDFAYTTK LDAT

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

TPEEQDETLR KAVAVFKAEF FPDRTEVQCL HRWQKVLDPE LIKGPWTQEE DDTIIQKVKE  60
HGPTKWSVIA RSLHGRIGKQ CRERWHNHLD PQIRKEAWTF EEEQVLVDAH RMHGNKWAEI  120
AKLLPGRTDN SIKNHWNSSV RKRLDEYDTG AARNVPVHVS HNDLKQPAIA LPAENYIDLN  180
EVPNISLRNH SGIVDHSDPT HSPRVCSLKN IKGCSDFLSL SMPTAQPVTS CQASAADDSA  240
VALAIMGMKM DSGRDKDIEL NFVCQKGLQI NLSNEKGLEI DPVTAKPDGR ESTLVKEAQS  300
FGSLCYQIPK LEDIDLVRSP VLSRHHGSEH GVDGFQSPTG YATPSPTDGK QSDQLSVESI  360
LKSAAENFPG TPSILRRRKR DKPTPSQDTD FKIDANSDCF DTPKANCTTY SPHSFKTAPF  420
LSLGRLDDQQ LPSVLGKFDV SPTYRLRSKR MAVLKTVEKH LDFSADAMDT CDMVGTLKSS  480
CRNTESINAS SDISSAHDRR INGHMIGLET LTSDFAYTTK LDAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	376	382	RRRKRDK
2	376	383	RRRKRDKP
3	377	383	RRRKRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	3e-78	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG042470.4