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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | TRIDC1AG044920.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | B3 | ||||||||
| Protein Properties | Length: 250aa MW: 28514.8 Da PI: 9.5545 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 59.6 | 5.6e-19 | 91 | 180 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
f+k++++s+v++ +l lp +f+++h ++ ++ +++lede+g +++ + +++ + l++GW++F ++L++gD++vF+l + ++f +
TRIDC1AG044920.2 91 FVKTMVRSHVSSCFWLGLPSSFCKDHL-PP-REHKMVLEDEEGVEFDAVY--IGNRTG--LSGGWRGFSMHHDLEDGDSLVFELAEPDRF--K 175
89*********************9994.44.4459***************..555444..***********************9876777..7 PP
EEEE- CS
B3 94 vkvfr 98
+ +f+
TRIDC1AG044920.2 176 IYIFK 180
77776 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 250 aa Download sequence |
QDKQTPRASP KSRKKFEATT EVRRSSRART TVSYKDDFPE LDDFVRRRRI SKSVDNGRGY 60 TGRISSYQQQ QRAFKRAEKL QDSLDPDNPS FVKTMVRSHV SSCFWLGLPS SFCKDHLPPR 120 EHKMVLEDEE GVEFDAVYIG NRTGLSGGWR GFSMHHDLED GDSLVFELAE PDRFKIYIFK 180 AIEDGKEAEP NDKNTDVDSD SAQEVPDQTD SPVSEPPSSP EPLKGAKRRK LPSSPEPLKG 240 AKRRKLRGRR |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 223 | 229 | LKGAKRR |
| 2 | 227 | 245 | KRRKLPSSPEPLKGAKRRK |
| 3 | 228 | 246 | KRRKLPSSPEPLKGAKRRK |
| 4 | 238 | 244 | LKGAKRR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G58280.1 | 7e-44 | B3 family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC1AG044920.2 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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