PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1AG049700.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 236aa    MW: 26605.9 Da    PI: 8.8452
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1AG049700.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B381.11.1e-2548149199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   + 
  TRIDC1AG049700.2  48 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyKQV-RPSQELVAKDLHGTQWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RG 137
                       99****************************97444.34579************************************************..34 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       +++el+++v+r+
  TRIDC1AG049700.2 138 DDGELRLGVRRA 149
                       89999****996 PP
2Auxin_resp63.76.9e-22174232159
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl 59 
                       +a++++++s+F+v++ Pr+++seF+v++++++k+l++++s+GmRf+ + e++d++er++
  TRIDC1AG049700.2 174 VASSLENRSIFHVCFDPRSGASEFIVPYWRFSKSLNHSFSIGMRFRDSNESDDANERSV 232
                       578899**************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
TDEVYARLAL VADAEMFRQN VRESASEEGE DGMAGGDGEK KPRMPHMFCK TLTASDTSTH  60
GGFSVPRRAA EDCFAPLDYK QVRPSQELVA KDLHGTQWRF RHIYRGQPRR HLLTTGWSSF  120
VNKKKLVSGD AVLFLRGDDG ELRLGVRRAV QLRNEALFKA VNSNESKLHT LSAVASSLEN  180
RSIFHVCFDP RSGASEFIVP YWRFSKSLNH SFSIGMRFRD SNESDDANER SVLLAH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.12e-90ARF family protein