PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG050040.10

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 670aa MW: 74897.3 Da PI: 4.6743

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG050040.10	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.9	7e-08	627	666	6	45
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVk 45 f + e+L+++F ++yp+++ +e LA++lgLt rqV+ TRIDC1AG050040.10 627 HFGPVINERLNQYFTTDQYPTRAVKESLAQELGLTFRQVR 666 566666789******************************7 PP
2	PHD	39.7	1.1e-13	285	340	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++lCdg C++ fH++Cl+++l ++++peg wlC+ C++k TRIDC1AG050040.10 285 VCATCSLqdVTLNNDIILCDGaCDRGFHQNCLNPPLLTKDIPEGeeGWLCPACDCK 340 5999998544459*****66*****************999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence
TDHRRLSGRR RTPARCWFIC ATTYRSIFCC DCTLQEDNFP KPSSFFLLEY KIISGRHQMD 60 KSNTSGCAAE DIIETRNYAN SSLNPEALKH QSFPFPYTSL SGERKNFKRA ANRGKKGSRV 120 LSSRTYPLKS SESTVRVLRS RSVADKSPSD AVQTSTERAA KKPPSDSVDT LVKPAAKRIK 180 RDRDRPTKGG PDDELSKIRK RIRYILNRMN YHQSFLEAYA SEGWKNQSLE KIRPEKELER 240 AKAEIVRCKL RIREAFQNLD HLLTVGKLEE SLFDSEGKIS SDDIVCATCS LQDVTLNNDI 300 ILCDGACDRG FHQNCLNPPL LTKDIPEGEE GWLCPACDCK IDCIELINEL QGTDLDINDS 360 WEKVFPEAAA VAHGSMQNDV ADLPSDDSED DDFDPNIPEE HVAGHAEGSS EEDGDEGSDS 420 DDSNFMTSSD NSEHVKEKEK VDDLGLPSED SEDDDYDPAG PDSDKDIEEK QDESDFTSDS 480 DDFCAEIMKS CSKDEVSSGP KVGGRTNDLE GAPVRPNTSM SHTKDLEIDQ DVILPSTKRQ 540 VQRLDYKKLY DDTYGEAPSE SSDGDDWSGK STLKEDNEEG NEVDSFARKS PRGTRVVHPD 600 GFHGLVNEQH AGGLTSDGSN SKAKKRHFGP VINERLNQYF TTDQYPTRAV KESLAQELGL 660 TFRQVRMSLS

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence

TDHRRLSGRR RTPARCWFIC ATTYRSIFCC DCTLQEDNFP KPSSFFLLEY KIISGRHQMD  60
KSNTSGCAAE DIIETRNYAN SSLNPEALKH QSFPFPYTSL SGERKNFKRA ANRGKKGSRV  120
LSSRTYPLKS SESTVRVLRS RSVADKSPSD AVQTSTERAA KKPPSDSVDT LVKPAAKRIK  180
RDRDRPTKGG PDDELSKIRK RIRYILNRMN YHQSFLEAYA SEGWKNQSLE KIRPEKELER  240
AKAEIVRCKL RIREAFQNLD HLLTVGKLEE SLFDSEGKIS SDDIVCATCS LQDVTLNNDI  300
ILCDGACDRG FHQNCLNPPL LTKDIPEGEE GWLCPACDCK IDCIELINEL QGTDLDINDS  360
WEKVFPEAAA VAHGSMQNDV ADLPSDDSED DDFDPNIPEE HVAGHAEGSS EEDGDEGSDS  420
DDSNFMTSSD NSEHVKEKEK VDDLGLPSED SEDDDYDPAG PDSDKDIEEK QDESDFTSDS  480
DDFCAEIMKS CSKDEVSSGP KVGGRTNDLE GAPVRPNTSM SHTKDLEIDQ DVILPSTKRQ  540
VQRLDYKKLY DDTYGEAPSE SSDGDDWSGK STLKEDNEEG NEVDSFARKS PRGTRVVHPD  600
GFHGLVNEQH AGGLTSDGSN SKAKKRHFGP VINERLNQYF TTDQYPTRAV KESLAQELGL  660
TFRQVRMSLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	197	203	KIRKRIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	3e-78	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG050040.10