PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG050040.11

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 1156aa MW: 128051 Da PI: 4.442

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG050040.11	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.7	1.3e-10	619	665	6	52
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 f + e+L+++F ++yp+++ +e LA++lgLt rqV WF R TRIDC1AG050040.11 619 HFGPVINERLNQYFTTDQYPTRAVKESLAQELGLTFRQVNKWFESTR 665 566666789**********************************8766 PP
2	Homeobox	22.4	2.1e-07	1099	1131	13	45
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVk 45 ++L e F+ n+yps++ +e LA++lgLt rqV TRIDC1AG050040.11 1099 QRLHEQFKTNQYPSRAVKESLAQELGLTFRQVC 1131 6899***************************95 PP
3	PHD	38.8	2.2e-13	277	332	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++lCdg C++ fH++Cl+++l ++++peg wlC+ C++k TRIDC1AG050040.11 277 VCATCSLqdVTLNNDIILCDGaCDRGFHQNCLNPPLLTKDIPEGeeGWLCPACDCK 332 5999998544459*****66*****************999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1156 aa Download sequence
RRRTPARCWF ICATTYRSIF CCDCTLQEDN FPKPSSFFLL EYKIISGRHQ MDKSNTSGCA 60 AEDIIETRNY ANSSLNPEAL KHQSFPFPYT SLSGERKNFK RAANRGKKGS RVLSSRTYPL 120 KSSESTVRVL RSRSVADKSP SDAVQTSTER AAKKPPSDSV DTLVKPAAKR IKRDRDRPTK 180 GGPDDELSKI RKRIRYILNR MNYHQSFLEA YASEGWKNQS LEKIRPEKEL ERAKAEIVRC 240 KLRIREAFQN LDHLLTVGKL EESLFDSEGK ISSDDIVCAT CSLQDVTLNN DIILCDGACD 300 RGFHQNCLNP PLLTKDIPEG EEGWLCPACD CKIDCIELIN ELQGTDLDIN DSWEKVFPEA 360 AAVAHGSMQN DVADLPSDDS EDDDFDPNIP EEHVAGHAEG SSEEDGDEGS DSDDSNFMTS 420 SDNSEHVKEK EKVDDLGLPS EDSEDDDYDP AGPDSDKDIE EKQDESDFTS DSDDFCAEIM 480 KSCSKDEVSS GPKVGGRTND LEGAPVRPNT SMSHTKDLEI DQDVILPSTK RQVQRLDYKK 540 LYDDTYGEAP SESSDGDDWS GKSTLKEDNE EGNEVDSFAR KSPRGTRVVH PDGFHGLVNE 600 QHAGGLTSDG SNSKAKKRHF GPVINERLNQ YFTTDQYPTR AVKESLAQEL GLTFRQVNKW 660 FESTRHARAA AMKNGAQLEK HSNSRKKKSS DQPNACKEEG IRQDSPVKQE TDGGQRAHMP 720 PESSQSYTKT SGLAGCPKSE SRENHEKNTP LKYVGMPTDG SAEDQILGLE PEDDGSDSDD 780 PNFAIRSGNS EPSKNREKVD DLGLPSAYSE DDDYDSDEVI EMMQSSSDES DSNESNFTTS 840 SDNPEDVKEK VDDIGLPSED SEDDDYDPAG PGSHEDIGKN QSSSDKSHSS DKSENRKTKR 900 KADDLGLPSE DSEDDDYDPA SPDSDKDIEE KQDESDFSSD CDDFCVEIAK SCCGQEGVPS 960 GAKVGGDRTD DLEGTTICAN AAISNLPSKD PEMDQYVVLP VSARQKVQSP DSKKLAAYGK 1020 ASSDSSYGEE LSKKCTPEKD NGKESEAGSF VRQSNEFTPQ RSQQSFHGSV NGQNAEELLT 1080 PNGSSTTGQK RQYGPIINQR LHEQFKTNQY PSRAVKESLA QELGLTFRQV CTSFFHEFPC 1140 MYSCLGIEQN PHYGFC

Sequence ? help Back to Top

Protein Sequence Length: 1156 aa Download sequence

RRRTPARCWF ICATTYRSIF CCDCTLQEDN FPKPSSFFLL EYKIISGRHQ MDKSNTSGCA  60
AEDIIETRNY ANSSLNPEAL KHQSFPFPYT SLSGERKNFK RAANRGKKGS RVLSSRTYPL  120
KSSESTVRVL RSRSVADKSP SDAVQTSTER AAKKPPSDSV DTLVKPAAKR IKRDRDRPTK  180
GGPDDELSKI RKRIRYILNR MNYHQSFLEA YASEGWKNQS LEKIRPEKEL ERAKAEIVRC  240
KLRIREAFQN LDHLLTVGKL EESLFDSEGK ISSDDIVCAT CSLQDVTLNN DIILCDGACD  300
RGFHQNCLNP PLLTKDIPEG EEGWLCPACD CKIDCIELIN ELQGTDLDIN DSWEKVFPEA  360
AAVAHGSMQN DVADLPSDDS EDDDFDPNIP EEHVAGHAEG SSEEDGDEGS DSDDSNFMTS  420
SDNSEHVKEK EKVDDLGLPS EDSEDDDYDP AGPDSDKDIE EKQDESDFTS DSDDFCAEIM  480
KSCSKDEVSS GPKVGGRTND LEGAPVRPNT SMSHTKDLEI DQDVILPSTK RQVQRLDYKK  540
LYDDTYGEAP SESSDGDDWS GKSTLKEDNE EGNEVDSFAR KSPRGTRVVH PDGFHGLVNE  600
QHAGGLTSDG SNSKAKKRHF GPVINERLNQ YFTTDQYPTR AVKESLAQEL GLTFRQVNKW  660
FESTRHARAA AMKNGAQLEK HSNSRKKKSS DQPNACKEEG IRQDSPVKQE TDGGQRAHMP  720
PESSQSYTKT SGLAGCPKSE SRENHEKNTP LKYVGMPTDG SAEDQILGLE PEDDGSDSDD  780
PNFAIRSGNS EPSKNREKVD DLGLPSAYSE DDDYDSDEVI EMMQSSSDES DSNESNFTTS  840
SDNPEDVKEK VDDIGLPSED SEDDDYDPAG PGSHEDIGKN QSSSDKSHSS DKSENRKTKR  900
KADDLGLPSE DSEDDDYDPA SPDSDKDIEE KQDESDFSSD CDDFCVEIAK SCCGQEGVPS  960
GAKVGGDRTD DLEGTTICAN AAISNLPSKD PEMDQYVVLP VSARQKVQSP DSKKLAAYGK  1020
ASSDSSYGEE LSKKCTPEKD NGKESEAGSF VRQSNEFTPQ RSQQSFHGSV NGQNAEELLT  1080
PNGSSTTGQK RQYGPIINQR LHEQFKTNQY PSRAVKESLA QELGLTFRQV CTSFFHEFPC  1140
MYSCLGIEQN PHYGFC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	195	KIRKRIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	7e-76	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG050040.11