PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG050040.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 1278aa MW: 141429 Da PI: 4.6412

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG050040.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.5	1.5e-10	627	673	6	52
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 f + e+L+++F ++yp+++ +e LA++lgLt rqV WF R TRIDC1AG050040.3 627 HFGPVINERLNQYFTTDQYPTRAVKESLAQELGLTFRQVNKWFESTR 673 566666789**********************************8766 PP
2	Homeobox	35.7	1.4e-11	1107	1147	13	53
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++L e F+ n+yps++ +e LA++lgLt rqV WF rR TRIDC1AG050040.3 1107 QRLHEQFKTNQYPSRAVKESLAQELGLTFRQVEKWFESRRR 1147 6899***********************************96 PP
3	PHD	38.6	2.5e-13	285	340	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++lCdg C++ fH++Cl+++l ++++peg wlC+ C++k TRIDC1AG050040.3 285 VCATCSLqdVTLNNDIILCDGaCDRGFHQNCLNPPLLTKDIPEGeeGWLCPACDCK 340 5999998544459*****66*****************999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1278 aa Download sequence
TDHRRLSGRR RTPARCWFIC ATTYRSIFCC DCTLQEDNFP KPSSFFLLEY KIISGRHQMD 60 KSNTSGCAAE DIIETRNYAN SSLNPEALKH QSFPFPYTSL SGERKNFKRA ANRGKKGSRV 120 LSSRTYPLKS SESTVRVLRS RSVADKSPSD AVQTSTERAA KKPPSDSVDT LVKPAAKRIK 180 RDRDRPTKGG PDDELSKIRK RIRYILNRMN YHQSFLEAYA SEGWKNQSLE KIRPEKELER 240 AKAEIVRCKL RIREAFQNLD HLLTVGKLEE SLFDSEGKIS SDDIVCATCS LQDVTLNNDI 300 ILCDGACDRG FHQNCLNPPL LTKDIPEGEE GWLCPACDCK IDCIELINEL QGTDLDINDS 360 WEKVFPEAAA VAHGSMQNDV ADLPSDDSED DDFDPNIPEE HVAGHAEGSS EEDGDEGSDS 420 DDSNFMTSSD NSEHVKEKEK VDDLGLPSED SEDDDYDPAG PDSDKDIEEK QDESDFTSDS 480 DDFCAEIMKS CSKDEVSSGP KVGGRTNDLE GAPVRPNTSM SHTKDLEIDQ DVILPSTKRQ 540 VQRLDYKKLY DDTYGEAPSE SSDGDDWSGK STLKEDNEEG NEVDSFARKS PRGTRVVHPD 600 GFHGLVNEQH AGGLTSDGSN SKAKKRHFGP VINERLNQYF TTDQYPTRAV KESLAQELGL 660 TFRQVNKWFE STRHARAAAM KNGAQLEKHS NSRKKKSSDQ PNACKEEGIR QDSPVKQETD 720 GGQRAHMPPE SSQSYTKTSG LAGCPKSESR ENHEKNTPLK YVGMPTDGSA EDQILGLEPE 780 DDGSDSDDPN FAIRSGNSEP SKNREKVDDL GLPSAYSEDD DYDSDEVIEM MQSSSDESDS 840 NESNFTTSSD NPEDVKEKVD DIGLPSEDSE DDDYDPAGPG SHEDIGKNQS SSDKSHSSDK 900 SENRKTKRKA DDLGLPSEDS EDDDYDPASP DSDKDIEEKQ DESDFSSDCD DFCVEIAKSC 960 CGQEGVPSGA KVGGDRTDDL EGTTICANAA ISNLPSKDPE MDQYVVLPVS ARQKVQSPDS 1020 KKLAAYGKAS SDSSYGEELS KKCTPEKDNG KESEAGSFVR QSNEFTPQRS QQSFHGSVNG 1080 QNAEELLTPN GSSTTGQKRQ YGPIINQRLH EQFKTNQYPS RAVKESLAQE LGLTFRQVEK 1140 WFESRRRHIR VASNKSSTHV ENHSTKENPN VCKRDAVNED TPSGSLNEGI TQDGPLKQDI 1200 GGGLRTNASP PNSSQRYTTP LVRRPKGESR ENHMKNTSSS SAGRPKGSDA GYAVLALEAF 1260 DEKTRSKMLQ ELKKRKIG

Sequence ? help Back to Top

Protein Sequence Length: 1278 aa Download sequence

TDHRRLSGRR RTPARCWFIC ATTYRSIFCC DCTLQEDNFP KPSSFFLLEY KIISGRHQMD  60
KSNTSGCAAE DIIETRNYAN SSLNPEALKH QSFPFPYTSL SGERKNFKRA ANRGKKGSRV  120
LSSRTYPLKS SESTVRVLRS RSVADKSPSD AVQTSTERAA KKPPSDSVDT LVKPAAKRIK  180
RDRDRPTKGG PDDELSKIRK RIRYILNRMN YHQSFLEAYA SEGWKNQSLE KIRPEKELER  240
AKAEIVRCKL RIREAFQNLD HLLTVGKLEE SLFDSEGKIS SDDIVCATCS LQDVTLNNDI  300
ILCDGACDRG FHQNCLNPPL LTKDIPEGEE GWLCPACDCK IDCIELINEL QGTDLDINDS  360
WEKVFPEAAA VAHGSMQNDV ADLPSDDSED DDFDPNIPEE HVAGHAEGSS EEDGDEGSDS  420
DDSNFMTSSD NSEHVKEKEK VDDLGLPSED SEDDDYDPAG PDSDKDIEEK QDESDFTSDS  480
DDFCAEIMKS CSKDEVSSGP KVGGRTNDLE GAPVRPNTSM SHTKDLEIDQ DVILPSTKRQ  540
VQRLDYKKLY DDTYGEAPSE SSDGDDWSGK STLKEDNEEG NEVDSFARKS PRGTRVVHPD  600
GFHGLVNEQH AGGLTSDGSN SKAKKRHFGP VINERLNQYF TTDQYPTRAV KESLAQELGL  660
TFRQVNKWFE STRHARAAAM KNGAQLEKHS NSRKKKSSDQ PNACKEEGIR QDSPVKQETD  720
GGQRAHMPPE SSQSYTKTSG LAGCPKSESR ENHEKNTPLK YVGMPTDGSA EDQILGLEPE  780
DDGSDSDDPN FAIRSGNSEP SKNREKVDDL GLPSAYSEDD DYDSDEVIEM MQSSSDESDS  840
NESNFTTSSD NPEDVKEKVD DIGLPSEDSE DDDYDPAGPG SHEDIGKNQS SSDKSHSSDK  900
SENRKTKRKA DDLGLPSEDS EDDDYDPASP DSDKDIEEKQ DESDFSSDCD DFCVEIAKSC  960
CGQEGVPSGA KVGGDRTDDL EGTTICANAA ISNLPSKDPE MDQYVVLPVS ARQKVQSPDS  1020
KKLAAYGKAS SDSSYGEELS KKCTPEKDNG KESEAGSFVR QSNEFTPQRS QQSFHGSVNG  1080
QNAEELLTPN GSSTTGQKRQ YGPIINQRLH EQFKTNQYPS RAVKESLAQE LGLTFRQVEK  1140
WFESRRRHIR VASNKSSTHV ENHSTKENPN VCKRDAVNED TPSGSLNEGI TQDGPLKQDI  1200
GGGLRTNASP PNSSQRYTTP LVRRPKGESR ENHMKNTSSS SAGRPKGSDA GYAVLALEAF  1260
DEKTRSKMLQ ELKKRKIG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	197	203	KIRKRIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-76	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG050040.3