PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG054700.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

RAV

Protein Properties

Length: 389aa MW: 41748 Da PI: 10.1018

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG054700.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.5	3.4e-13	65	113	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f + eAa+a++aa+++++g TRIDC1AG054700.1 65 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDAAAQRFRG 113 89**9888.8*****......44******99***********98 PP
2	B3	96.3	2.1e-30	200	298	1	88
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+ tpsdv+k++rlv+pk++ae+h +g + ++ l + d g++W+++++y+++s++yvltkGW++Fvk++gL +gD vv TRIDC1AG054700.1 200 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsagtavSG-ECKGALLNFDDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVV 291 89*************************88888777533.337889****************************************** PP EEE-SSS CS B3 82 Fkldgrs 88 F+++ + TRIDC1AG054700.1 292 FYRSASG 298 66433 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MESARSCLME DVSSGASTGN KASAVPAAPA TKPLQRVGSG ASAVMDAPEP GAEADSGRGG 60 RLPSSKYKGV VPQPNGRWGA QIYERHQRVW LGTFTGEAEA ARAYDAAAQR FRGRDAVTNF 120 RPLVESDADD AAELRFLAAR SKAEVVDMLR KHIYPDELAQ HKRAFLASAA SSPTSSSSAP 180 ASSAPSAAAP SAATRREHLF DKTVTPSDVG KLNRLVIPKQ HAEKHFPLQL PSAGTAVSGE 240 CKGALLNFDD AAGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV VFYRSASGNN 300 QFFIDCKLRS MTTTTTFVNA TAATTSPAPV MRAVRLFGVD LLTAPALRHA PEHEDYGMAK 360 TNKRFVDASV AAATPAHAVW KKRCVDFSL

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MESARSCLME DVSSGASTGN KASAVPAAPA TKPLQRVGSG ASAVMDAPEP GAEADSGRGG  60
RLPSSKYKGV VPQPNGRWGA QIYERHQRVW LGTFTGEAEA ARAYDAAAQR FRGRDAVTNF  120
RPLVESDADD AAELRFLAAR SKAEVVDMLR KHIYPDELAQ HKRAFLASAA SSPTSSSSAP  180
ASSAPSAAAP SAATRREHLF DKTVTPSDVG KLNRLVIPKQ HAEKHFPLQL PSAGTAVSGE  240
CKGALLNFDD AAGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV VFYRSASGNN  300
QFFIDCKLRS MTTTTTFVNA TAATTSPAPV MRAVRLFGVD LLTAPALRHA PEHEDYGMAK  360
TNKRFVDASV AAATPAHAVW KKRCVDFSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-103	RAV family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG054700.1