PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG054710.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

RAV

Protein Properties

Length: 406aa MW: 44054.2 Da PI: 10.4601

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG054710.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.4	3.6e-13	86	134	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f + eAa+a++aa+++++g TRIDC1AG054710.1 86 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDAAAQRFRG 134 89**9888.8*****......44******99***********98 PP
2	B3	89.6	2.5e-28	221	321	1	90
EEEE-..-HHHHTT-EE--HHH.HTT............---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+ tpsdv+k++rlv+pk++ae+h +++ l + d g+ W+++++y+++s++yvltkGW++Fvk++gL +gD TRIDC1AG054710.1 221 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsastavP---GecKGVLLNFDDAVGKMWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDA 310 89*************************8887776652...144889***************************************** PP EEEEE-SSSEE CS B3 80 vvFkldgrsef 90 v F+++ + + TRIDC1AG054710.1 311 VGFYRSASGNN 321 **7654444 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
FAMPSLAPSR RLWQLLYFLL PTPACKHGHH MTAQAAPKQK WKASPAPAAP ATKPLQRIGS 60 GASAVMDAPE PSAEADSCRV GRLPSSKYKG VVPQPNGRWG AQIYERHQRV WLGTFTGEAE 120 AARAYDAAAQ RFRGRDAVTN FRPLAESDPG DAAELRFLAA RSKAEVVDML RKHIYPDELA 180 QHKRAFLASA ASSPTSSSLV PASSAPSAAA PSAAARREHL FDKTVTPSDV GKLNRLVIPK 240 QHAEKHFPLQ LPSASTAVPG ECKGVLLNFD DAVGKMWRFR YSYWNSSQSY VLTKGWSRFV 300 KEKGLHAGDA VGFYRSASGN NQLFIDCKLR SKSTTTFLNA AAAPSPAPVT RTVRLFGVDL 360 LTAPAPEHEE YGLVPKTNKR SMDASVAAAT PAHAVWKKRC VDFALT

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

FAMPSLAPSR RLWQLLYFLL PTPACKHGHH MTAQAAPKQK WKASPAPAAP ATKPLQRIGS  60
GASAVMDAPE PSAEADSCRV GRLPSSKYKG VVPQPNGRWG AQIYERHQRV WLGTFTGEAE  120
AARAYDAAAQ RFRGRDAVTN FRPLAESDPG DAAELRFLAA RSKAEVVDML RKHIYPDELA  180
QHKRAFLASA ASSPTSSSLV PASSAPSAAA PSAAARREHL FDKTVTPSDV GKLNRLVIPK  240
QHAEKHFPLQ LPSASTAVPG ECKGVLLNFD DAVGKMWRFR YSYWNSSQSY VLTKGWSRFV  300
KEKGLHAGDA VGFYRSASGN NQLFIDCKLR SKSTTTFLNA AAAPSPAPVT RTVRLFGVDL  360
LTAPAPEHEE YGLVPKTNKR SMDASVAAAT PAHAVWKKRC VDFALT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-103	RAV family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG054710.1