PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG054710.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

RAV

Protein Properties

Length: 386aa MW: 41414.9 Da PI: 10.186

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG054710.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.5	3.4e-13	65	113	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f + eAa+a++aa+++++g TRIDC1AG054710.2 65 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDAAAQRFRG 113 89**9888.8*****......44******99***********98 PP
2	B3	89.7	2.2e-28	200	300	1	90
EEEE-..-HHHHTT-EE--HHH.HTT............---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+ tpsdv+k++rlv+pk++ae+h +++ l + d g+ W+++++y+++s++yvltkGW++Fvk++gL +gD TRIDC1AG054710.2 200 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsastavP---GecKGVLLNFDDAVGKMWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDA 289 89*************************8887776652...144889***************************************** PP EEEEE-SSSEE CS B3 80 vvFkldgrsef 90 v F+++ + + TRIDC1AG054710.2 290 VGFYRSASGNN 300 **7654444 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MDSARSCLVG DVSSGASTGK KASPAPAAPA TKPLQRIGSG ASAVMDAPEP SAEADSCRVG 60 RLPSSKYKGV VPQPNGRWGA QIYERHQRVW LGTFTGEAEA ARAYDAAAQR FRGRDAVTNF 120 RPLAESDPGD AAELRFLAAR SKAEVVDMLR KHIYPDELAQ HKRAFLASAA SSPTSSSLVP 180 ASSAPSAAAP SAAARREHLF DKTVTPSDVG KLNRLVIPKQ HAEKHFPLQL PSASTAVPGE 240 CKGVLLNFDD AVGKMWRFRY SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV GFYRSASGNN 300 QLFIDCKLRS KSTTTFLNAA AAPSPAPVTR TVRLFGVDLL TAPAPEHEEY GLVPKTNKRS 360 MDASVAAATP AHAVWKKRCV DFALTY

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MDSARSCLVG DVSSGASTGK KASPAPAAPA TKPLQRIGSG ASAVMDAPEP SAEADSCRVG  60
RLPSSKYKGV VPQPNGRWGA QIYERHQRVW LGTFTGEAEA ARAYDAAAQR FRGRDAVTNF  120
RPLAESDPGD AAELRFLAAR SKAEVVDMLR KHIYPDELAQ HKRAFLASAA SSPTSSSLVP  180
ASSAPSAAAP SAAARREHLF DKTVTPSDVG KLNRLVIPKQ HAEKHFPLQL PSASTAVPGE  240
CKGVLLNFDD AVGKMWRFRY SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV GFYRSASGNN  300
QLFIDCKLRS KSTTTFLNAA AAPSPAPVTR TVRLFGVDLL TAPAPEHEEY GLVPKTNKRS  360
MDASVAAATP AHAVWKKRCV DFALTY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-104	RAV family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG054710.2