PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1AG054720.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 387aa    MW: 41898.3 Da    PI: 10.3084
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1AG054720.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.53.4e-1384132155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      r +r++lg+f  + eAa+a++aa+++++g
  TRIDC1AG054720.1  84 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDAAAQRFRG 132
                       89****9888.8*********......44**********99*************98 PP
2B3941e-29203305192
                       EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                       f+k+ tpsdv+k++rlv+pk++ae+h            +g + +++ l + d+ g++W+++++y+++s++yvltkGW++Fvk++gL +gD v 
  TRIDC1AG054720.1 203 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsagaavSG-ECKGMLLNFDDSAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVG 294
                       89***************************88888777532.34899*********************************************** PP

                       EEE-SSSEE.. CS
                B3  82 Fkldgrsefel 92 
                       F+++ + + +l
  TRIDC1AG054720.1 295 FYRSASGSNQL 305
                       **776554444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    
GSRTSRKLYG TISVTVYYER PSARSCLVDD VSSGASTGKK ASPSPAAPAT KPLQRVGSGA  60
SAVMDAPEPG AEADSGRVGR LPSSKYKGVV PQPNGRWGAQ IYERHQRVWL GTFTGEAEAA  120
RAYDAAAQRF RGRDAVTNFR PLTESDPEDA AELRFLAARS KAEVVDMLRK HTYPDELAQY  180
KRAYFAAAAA ASPSPAARRE HLFDKTVTPS DVGKLNRLVI PKQHAEKHFP LQLPSAGAAV  240
SGECKGMLLN FDDSAGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKGLHAG DAVGFYRSAS  300
GSNQLFIDCK LRSKTTTMTT TFVNAAAAPS PAPVMRTVRL FGVDLLTAPA PSHAPEHEDC  360
SMVPKTSKRS MDASAAATPA HAVWKKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-102RAV family protein