PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG054720.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

RAV

Protein Properties

Length: 371aa MW: 40027.2 Da PI: 10.0628

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG054720.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.6	3.2e-13	71	119	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f + eAa+a++aa+++++g TRIDC1AG054720.2 71 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDAAAQRFRG 119 89**9888.8*****......44******99***********98 PP
2	B3	94.1	9.6e-30	190	292	1	92
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+ tpsdv+k++rlv+pk++ae+h +g + +++ l + d+ g++W+++++y+++s++yvltkGW++Fvk++gL +gD v TRIDC1AG054720.2 190 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsagaavSG-ECKGMLLNFDDSAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVG 281 89*************************88888777532.34899******************************************* PP EEE-SSSEE.. CS B3 82 Fkldgrsefel 92 F+++ + + +l TRIDC1AG054720.2 282 FYRSASGSNQL 292 876554444 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
LGDRIRMDSA RSCLVDDVSS GASTGKKASP SPAAPATKPL QRVGSGASAV MDAPEPGAEA 60 DSGRVGRLPS SKYKGVVPQP NGRWGAQIYE RHQRVWLGTF TGEAEAARAY DAAAQRFRGR 120 DAVTNFRPLT ESDPEDAAEL RFLAARSKAE VVDMLRKHTY PDELAQYKRA YFAAAAAASP 180 SPAARREHLF DKTVTPSDVG KLNRLVIPKQ HAEKHFPLQL PSAGAAVSGE CKGMLLNFDD 240 SAGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV GFYRSASGSN QLFIDCKLRS 300 KTTTMTTTFV NAAAAPSPAP VMRTVRLFGV DLLTAPAPSH APEHEDCSMV PKTSKRSMDA 360 SAAATPAHAV W

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

LGDRIRMDSA RSCLVDDVSS GASTGKKASP SPAAPATKPL QRVGSGASAV MDAPEPGAEA  60
DSGRVGRLPS SKYKGVVPQP NGRWGAQIYE RHQRVWLGTF TGEAEAARAY DAAAQRFRGR  120
DAVTNFRPLT ESDPEDAAEL RFLAARSKAE VVDMLRKHTY PDELAQYKRA YFAAAAAASP  180
SPAARREHLF DKTVTPSDVG KLNRLVIPKQ HAEKHFPLQL PSAGAAVSGE CKGMLLNFDD  240
SAGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV GFYRSASGSN QLFIDCKLRS  300
KTTTMTTTFV NAAAAPSPAP VMRTVRLFGV DLLTAPAPSH APEHEDCSMV PKTSKRSMDA  360
SAAATPAHAV W

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-102	RAV family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG054720.2