PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG010310.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 392aa MW: 42198.5 Da PI: 8.3846

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG010310.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.3	3.3e-07	205	227	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H TRIDC1BG010310.2 205 HYCQVCGKGFKRDANLRMHMRAH 227 68*******************99 PP
2	zf-C2H2	11.3	0.0011	301	324	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k+Fs s+L++H + + TRIDC1BG010310.2 301 YVCNRCNgKHFSVLSDLRTHEKHC 324 9*******************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MMFPDAGASP YFPQSQQQRF HGINGIGEDA AFPGDGGLAL AVPDTHRSTC TLLYNLSVLK 60 DKVHQLEPLV GLAVGRGHGH VVDPVVPGAS AVVQEIIAVA TSMLYALQHP YGLGALTKSV 120 NNAATPEDVV DGHAKNGLAD DDQEAMVDAM RQWQQQHHHG GGHDIPGKSA EAAAVSSSTQ 180 ATTDSAVDTT IIELDAAELL AKYTHYCQVC GKGFKRDANL RMHMRAHGDE YKSKAALANP 240 TTRLFGPSGY DAAVDAAGRR NKYSCPQDGC RWNRRHAKFQ PLKSVICVKN HYKRSHCPKM 300 YVCNRCNGKH FSVLSDLRTH EKHCGDHRWI CSCGTTFSRK DKLAGHVSLF AGHQPVAPLA 360 AGRHGKRSSL LSTSSSDLAG NCTNTGFSIT PT

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MMFPDAGASP YFPQSQQQRF HGINGIGEDA AFPGDGGLAL AVPDTHRSTC TLLYNLSVLK  60
DKVHQLEPLV GLAVGRGHGH VVDPVVPGAS AVVQEIIAVA TSMLYALQHP YGLGALTKSV  120
NNAATPEDVV DGHAKNGLAD DDQEAMVDAM RQWQQQHHHG GGHDIPGKSA EAAAVSSSTQ  180
ATTDSAVDTT IIELDAAELL AKYTHYCQVC GKGFKRDANL RMHMRAHGDE YKSKAALANP  240
TTRLFGPSGY DAAVDAAGRR NKYSCPQDGC RWNRRHAKFQ PLKSVICVKN HYKRSHCPKM  300
YVCNRCNGKH FSVLSDLRTH EKHCGDHRWI CSCGTTFSRK DKLAGHVSLF AGHQPVAPLA  360
AGRHGKRSSL LSTSSSDLAG NCTNTGFSIT PT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	2e-94	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG010310.2