PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG012250.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 608aa MW: 64447 Da PI: 8.0052

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG012250.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.9	3e-07	258	279	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G C+ Gd C +aHg TRIDC1BG012250.1 258 PCPEFRKGGSCRKGDGCEYAHG 279 8********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
MCSGPRKPST PPPVAAAPKD SAAMASLLLE LAAADDVVEF RRVVEEEKAC LDAAGSWYGP 60 SAAGLGRLAA ESRTPAMVAA LYGSTAVLAH ALSVAPGEAC RASGTDGATA LHLAAAGGAA 120 NAVAATHLLL AAGASTETLS VSGLRAGDLL PRAAGVAEKP LRLLLKSPAV SPSSSPKKSA 180 SPPAMVAAQE PRKEYPPDLT LPDLKSGLFS TDEFRMYSFK VKPCSRAYSH DWTECPFVHP 240 GENARRRDPR RYSYSCVPCP EFRKGGSCRK GDGCEYAHGV FECWLHPAQY RTRLCKDEVG 300 CARRICFFAH RRDELRSVNP SAVSVGMMQP VSPRSSPPNG MDMGMLNPAG WPSSPVSRLK 360 TARELDFDLE MLALDQYQQK LFDKVSNNAH SPRASWGAPN GGLGSPHAAG SPARNMPDYT 420 DLLGSMDPAM LSQLHALSLK QAGDMSPYSS MPDTQLHMPT SPMVGANNSF GIDHSMAKAI 480 MTSRASAFAK RSQSFIDRGA RAPAARSLMS PATTIGEPSM LTDWGSPSGG GNLDWGSPGG 540 KLDWGVQGDE LHKFRKSASF GFRGQSAMPA ASPATPAEPD VSWVNSLVKD GHTGDHFPQW 600 LEQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

MCSGPRKPST PPPVAAAPKD SAAMASLLLE LAAADDVVEF RRVVEEEKAC LDAAGSWYGP  60
SAAGLGRLAA ESRTPAMVAA LYGSTAVLAH ALSVAPGEAC RASGTDGATA LHLAAAGGAA  120
NAVAATHLLL AAGASTETLS VSGLRAGDLL PRAAGVAEKP LRLLLKSPAV SPSSSPKKSA  180
SPPAMVAAQE PRKEYPPDLT LPDLKSGLFS TDEFRMYSFK VKPCSRAYSH DWTECPFVHP  240
GENARRRDPR RYSYSCVPCP EFRKGGSCRK GDGCEYAHGV FECWLHPAQY RTRLCKDEVG  300
CARRICFFAH RRDELRSVNP SAVSVGMMQP VSPRSSPPNG MDMGMLNPAG WPSSPVSRLK  360
TARELDFDLE MLALDQYQQK LFDKVSNNAH SPRASWGAPN GGLGSPHAAG SPARNMPDYT  420
DLLGSMDPAM LSQLHALSLK QAGDMSPYSS MPDTQLHMPT SPMVGANNSF GIDHSMAKAI  480
MTSRASAFAK RSQSFIDRGA RAPAARSLMS PATTIGEPSM LTDWGSPSGG GNLDWGSPGG  540
KLDWGVQGDE LHKFRKSASF GFRGQSAMPA ASPATPAEPD VSWVNSLVKD GHTGDHFPQW  600
LEQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-110	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG012250.1