PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG031210.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 207aa MW: 22801.8 Da PI: 10.4231

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG031210.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.3	1.9e-14	3	51	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+++ ++++G g +W ++t+g++R++ +c+srw++yl TRIDC1BG031210.1 3 KGKWSKEEDNLIKNHIEKYGIGcSWQGLSNTLGLRRCGRSCRSRWLNYL 51 79*********************************************97 PP
2	Myb_DNA-binding	39.5	1.3e-12	58	101	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g++T+ Ed+++ + ++ G+ W+ Ia++++ gRt+ +k++w++ TRIDC1BG031210.1 58 GNFTPAEDKIICEMYRKKGSC-WSVIAAELP-GRTDLAIKNYWNST 101 89*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence
MKKGKWSKEE DNLIKNHIEK YGIGCSWQGL SNTLGLRRCG RSCRSRWLNY LRPGLKHGNF 60 TPAEDKIICE MYRKKGSCWS VIAAELPGRT DLAIKNYWNS TLKKRFPRPR AARSRRRRRR 120 TGGTSTSSDA TSLDLALVVY DEESTSGTAR DLPLVVCNEE NSATTARDLP LVAYNVNEAS 180 ATAGSSSSHA GVVSAGSPVQ ARAQPTP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	120	KKRFPRPRAARSRRRRRR
2	115	120	RRRRRR
3	115	121	RRRRRRT
4	116	122	RRRRRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37780.1	2e-32	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG031210.1