PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1BG044620.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 189aa    MW: 21483.7 Da    PI: 10.1049
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1BG044620.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.12.6e-292676151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++ rqvtf+kRrng+lKKA+ELSvLC+ae+a+i+fs +g+lyey+s
  TRIDC1BG044620.2 26 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCEAEIALIVFSARGRLYEYAS 76
                      79***********************************************86 PP
2K-box103.82.1e-34100189998
             K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        + + +++ qqe+akL+ +i++Lq+ +R+l+Ge++++L+lkeL++Le++L+k++ +iR+kK+ell+++ie++qk e +lq+en++Lr+k+
  TRIDC1BG044620.2 100 IDVNSQQYFQQESAKLRHQIQSLQNANRNLMGESVGNLTLKELKSLENRLDKGIGRIRAKKHELLFAEIEYMQKLEVDLQSENMYLRAKV 189
                       5667789********************************************************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
SCPSPPLRDW TPELLATMGR GKIEIKRIEN TTSRQVTFCK RRNGLLKKAY ELSVLCEAEI  60
ALIVFSARGR LYEYASNSTR TTIDRYKKAS ASASGSAPAI DVNSQQYFQQ ESAKLRHQIQ  120
SLQNANRNLM GESVGNLTLK ELKSLENRLD KGIGRIRAKK HELLFAEIEY MQKLEVDLQS  180
ENMYLRAKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.14e-83MIKC_MADS family protein