PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG047480.16

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 133aa MW: 13908.5 Da PI: 8.0342

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG047480.16	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	44.3	2.9e-14	8	32	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C tV TRIDC1BG047480.16 8 CSGCRNLLMYPAGATSVCCAVCSTV 32 ***********************99 PP
2	zf-LSD1	47	4.2e-15	47	71	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV TRIDC1BG047480.16 47 CGGCHTLLMYIRGATSVQCSCCHTV 71 ************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence
GAQSQLVCSG CRNLLMYPAG ATSVCCAVCS TVTAVPAPGT EMAQLVCGGC HTLLMYIRGA 60 TSVQCSCCHT VNLAMEGIST KAFISLSLPG LQVVYAAGFD SLFETMLTLI RVCKTLLLSR 120 MYSEVGKALA ISR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	6e-33	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG047480.16