PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG047480.17

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 109aa MW: 11208 Da PI: 7.7974

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG047480.17	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	25.6	2e-08	1	17	9	25
zf-LSD1 9 sYPrGApsVRCalCdtV 25 +YP+GA+sV+Ca+C tV TRIDC1BG047480.17 1 MYPAGATSVCCAVCSTV 17 9**************99 PP
2	zf-LSD1	47.5	3e-15	32	56	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV TRIDC1BG047480.17 32 CGGCHTLLMYIRGATSVQCSCCHTV 56 ************************9 PP
3	zf-LSD1	39	1.3e-12	70	94	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C +V TRIDC1BG047480.17 70 CGSCRMLLMYQYGARSVKCAVCSFV 94 **********************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence
MYPAGATSVC CAVCSTVTAV PAPGTEMAQL VCGGCHTLLM YIRGATSVQC SCCHTVNLAM 60 EANQVAHVNC GSCRMLLMYQ YGARSVKCAV CSFVTSVGAS SGAEQKPSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	3e-50	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG047480.17