PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1BG053840.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 405aa    MW: 43539.8 Da    PI: 12.2418
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1BG053840.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS151.76.6e-47362222185
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl..fsevsPil 91 
                       ++lLl+cA a++s+d +laq++++ l+++as +gdp+qRl++ ++++L ar  r  +s  ++++ p ++    s++++++++l  +++++P++
  TRIDC1BG053840.1  36 QQLLLHCAAALESNDVTLAQQAMWVLNNIASAQGDPNQRLTSSLLRGLVARACRtCGSPRADSMGPPPALG--SQRAMSVTELadYVDLTPWH 126
                       699***************************************************54555566664444432..555555555577******** PP

              GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl 181
                       +f++ + N aIl+av+g ++vH++D++++ ++QWp+L++aL++Rp+gpp lRiT+ +   +g        ee+g rLa+fA++ gv++efnv+
  TRIDC1BG053840.1 127 RFGFTASNGAILRAVAGRDTVHVVDLGVTRCMQWPTLIDALSKRPGGPPALRITVPSVRPAGpplLGVPDEEIGLRLANFAKSKGVHLEFNVV 219
                       ******************************************************98886666877777789********************95 PP

              GRAS 182 vakr 185
                         kr
  TRIDC1BG053840.1 220 -NKR 222
                       .443 PP
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    
SRGHLGMEQE LRGGGAVRAQ STLCFSGALV DGPRIQQLLL HCAAALESND VTLAQQAMWV  60
LNNIASAQGD PNQRLTSSLL RGLVARACRT CGSPRADSMG PPPALGSQRA MSVTELADYV  120
DLTPWHRFGF TASNGAILRA VAGRDTVHVV DLGVTRCMQW PTLIDALSKR PGGPPALRIT  180
VPSVRPAGPP LLGVPDEEIG LRLANFAKSK GVHLEFNVVN KRARLRPLRP VGAAAKRRRG  240
ARRELPELAP ARRAGLEGRL RGRGPGAGPV PGHRDRRGRR PGLAEPGHAH RGLLQLPLDP  300
LRRARHIRAE GQPAAAGARG RRGPEDRERR RRRRHRAVRV RREARGEDAT ERVRRRGVRP  360
GRGGRGAAPA ERARDGVGRE AGGGHASAHV EGACSRVHHC LGAQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329334RRRRRR
2329336RRRRRRHR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.16e-57GRAS family protein