PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1BG053840.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 420aa    MW: 44995.1 Da    PI: 6.8872
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1BG053840.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS266.77.9e-82354172373
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl..fsevsPil 91 
                       ++lLl+cA a++s+d +laq++++ l+++as +gdp+qRl++ ++++L ar  r  +s  ++++ p ++    s++++++++l  +++++P++
  TRIDC1BG053840.2  35 QQLLLHCAAALESNDVTLAQQAMWVLNNIASAQGDPNQRLTSSLLRGLVARACRtCGSPRADSMGPPPALG--SQRAMSVTELadYVDLTPWH 125
                       699***************************************************54555566664444432..555555555577******** PP

              GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl 181
                       +f++ + N aIl+av+g ++vH++D++++ ++QWp+L++aL++Rp+gpp lRiT+ +   +g        ee+g rLa+fA++ gv++efnv+
  TRIDC1BG053840.2 126 RFGFTASNGAILRAVAGRDTVHVVDLGVTRCMQWPTLIDALSKRPGGPPALRITVPSVRPAGpplLGVPDEEIGLRLANFAKSKGVHLEFNVV 218
                       ******************************************************98886666877777789*********************9 PP

              GRAS 182 ................vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                                       ++++l+++  + ++Lr++ gEal+Vn++  l ++       +  rd ++++v+ l P +v+v++++ad++s+s+++r
  TRIDC1BG053840.2 219 nkstatsspsptklqtLCQELACVlsDQSALRLRDGEALVVNCQSWLRHVA------PGSRDGFVDAVRALDPCLVTVTDEDADLDSPSLATR 305
                       88888887777766665555555566778889999************9998......445778****************************** PP

              GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                       ++ ++++++ lfd+l++++pr+s  r   E++ +g++i++vv + g+e   r e+ ++  er+++ GF  + +++++++++++ll++++  g+
  TRIDC1BG053840.2 306 IAGCFNFHWILFDALDTSAPRDSPRRLEHEAA-VGQKIESVVGADGTE---RSESGARLAERMRRKGFAGAGFGQDEVAEVRHLLSEHA-TGW 393
                       ******************************99.**************9...6777778889****************************.99* PP

              GRAS 350 rveeesgslvlgWkdrpLvsvSaW 373
                        v+ e++ lvl+Wk+++ v+++aW
  TRIDC1BG053840.2 394 GVKREEDMLVLTWKGHAAVFTTAW 417
                       ************************ PP
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    
RGHLGMEQEL RGGGAVRAQS TLCFSGALVD GPRIQQLLLH CAAALESNDV TLAQQAMWVL  60
NNIASAQGDP NQRLTSSLLR GLVARACRTC GSPRADSMGP PPALGSQRAM SVTELADYVD  120
LTPWHRFGFT ASNGAILRAV AGRDTVHVVD LGVTRCMQWP TLIDALSKRP GGPPALRITV  180
PSVRPAGPPL LGVPDEEIGL RLANFAKSKG VHLEFNVVNK STATSSPSPT KLQTLCQELA  240
CVLSDQSALR LRDGEALVVN CQSWLRHVAP GSRDGFVDAV RALDPCLVTV TDEDADLDSP  300
SLATRIAGCF NFHWILFDAL DTSAPRDSPR RLEHEAAVGQ KIESVVGADG TERSESGARL  360
AERMRRKGFA GAGFGQDEVA EVRHLLSEHA TGWGVKREED MLVLTWKGHA AVFTTAWAPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-107GRAS family protein