PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1BG056400.4
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 256aa    MW: 28864.4 Da    PI: 8.4867
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1BG056400.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.32e-2552153199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   + 
  TRIDC1BG056400.4  52 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyKQV-RPSQELVAKDLDGTQWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RG 141
                       99****************************97444.34579************************************************..34 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       +++el+++v+r+
  TRIDC1BG056400.4 142 DDGELRLGVRRA 153
                       89999****996 PP
2Auxin_resp97.51.9e-32178256180
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWr 80 
                       +a++++++ +F+v++ Pr+++seF+v++++++k+l++++s+GmRfk + e++d++er+ +G+++g+s++dp+rWp+SkWr
  TRIDC1BG056400.4 178 VASSLENRRIFHVCFDPRSGASEFIVPYWRFSKSLNHPFSIGMRFKDSNESDDANERS-TGLISGISEVDPIRWPGSKWR 256
                       578899***************************************************9.9*******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
ADAATDEVYA RLALVADAEM FRQNVRESAP EEGEDEMAGG DGEKKPRMLH MFCKTLTASD  60
TSTHGGFSVP RRAAEDCFAP LDYKQVRPSQ ELVAKDLDGT QWRFRHIYRG QPRRHLLTTG  120
WSSFVNKKKL VSGDAVLFLR GDDGELRLGV RRAVQLRNEA LFKAVNSNES KLHTLSAVAS  180
SLENRRIFHV CFDPRSGASE FIVPYWRFSK SLNHPFSIGM RFKDSNESDD ANERSTGLIS  240
GISEVDPIRW PGSKWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-104ARF family protein