PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1BG056400.5
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 233aa    MW: 26664 Da    PI: 9.1521
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1BG056400.5genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.61.6e-2542143199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   + 
  TRIDC1BG056400.5  42 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyKQV-RPSQELVAKDLDGTQWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RG 131
                       99****************************97444.34579************************************************..34 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       +++el+++v+r+
  TRIDC1BG056400.5 132 DDGELRLGVRRA 143
                       89999****996 PP
2Auxin_resp64.24.9e-22168226159
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl 59 
                       +a++++++ +F+v++ Pr+++seF+v++++++k+l++++s+GmRfk + e++d++er++
  TRIDC1BG056400.5 168 VASSLENRRIFHVCFDPRSGASEFIVPYWRFSKSLNHPFSIGMRFKDSNESDDANERSV 226
                       578899***************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
RLALVADAEM FRQNVRESAP EEGEDEMAGG DGEKKPRMLH MFCKTLTASD TSTHGGFSVP  60
RRAAEDCFAP LDYKQVRPSQ ELVAKDLDGT QWRFRHIYRG QPRRHLLTTG WSSFVNKKKL  120
VSGDAVLFLR GDDGELRLGV RRAVQLRNEA LFKAVNSNES KLHTLSAVAS SLENRRIFHV  180
CFDPRSGASE FIVPYWRFSK SLNHPFSIGM RFKDSNESDD ANERSVYWID FRY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-84ARF family protein