PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG056900.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 662aa MW: 74025.5 Da PI: 4.7619

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG056900.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22	2.8e-07	625	658	12	45
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVk 45 e+L+++F ++yps++ +e LA++lgLt qV+ TRIDC1BG056900.1 625 NERLNQYFTTDQYPSRAVKESLAQELGLTFHQVR 658 589****************************997 PP
2	PHD	40.3	7.2e-14	277	332	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ ++ +++++lCdg C++ fH++Cl+++l ++++peg wlC+ C++k TRIDC1BG056900.1 277 VCATCSLqeATLNNDIILCDGaCDRGFHQNCLNPPLLTKDIPEGeeGWLCPACDCK 332 599999854555******66*****************999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence
LAGRRRTLAR CWFIWCNYVQ IHILLRLRSA RRQFSEAVFF LLLEYKIISG RHQMDKSNTS 60 GCAEDTIETR SYANSSLNPE ALKHQSFPFP YTSPSGERKN FKRAANRGRK GSRVLSSRTY 120 PLKSSESTVR VLRSRSVADK SPSDSVQTPT EKAAKKPPSD SVDTLVKPAA KRIKRDRPTK 180 GGPDDELSKI RKRIRYILNR MNYHQSFLEA YASEGWKNQS LEKIRPEKEL ERAKEEIVRC 240 KLRIREAFQN LDHLLTVGKL EESLFDSEGK ISSDDIVCAT CSLQEATLNN DIILCDGACD 300 RGFHQNCLNP PLLTKDIPEG EEGWLCPACD CKIDCIELIN ELQGTDLDIN DSWEKVFPEA 360 AAVAHGPMQN DVADLPSDDS EDDDFDPNIS EEHVAGHAEG SSEEDGDEGS DSDDSNFMTS 420 SDNSEHVKEK VKVDDLGLPS EDSEDDDYDP AGPDSDKDIE EKQDESDFTS DSDEFCAEIT 480 KSCSKDEVSS GPKVGGRTND LEGAPVRPNT SMSHSKDLEI DPDVILPSTK RQVQRLDYKK 540 LYDDTYGEAP SESSDGDEWS GKSTLKEDNE ERNEVDSFAR KSSRGTRAVH PDGFHGLVND 600 QHAGGLTSAG SNSKANKRHF GPVINERLNQ YFTTDQYPSR AVKESLAQEL GLTFHQVRMS 660 LS

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence

LAGRRRTLAR CWFIWCNYVQ IHILLRLRSA RRQFSEAVFF LLLEYKIISG RHQMDKSNTS  60
GCAEDTIETR SYANSSLNPE ALKHQSFPFP YTSPSGERKN FKRAANRGRK GSRVLSSRTY  120
PLKSSESTVR VLRSRSVADK SPSDSVQTPT EKAAKKPPSD SVDTLVKPAA KRIKRDRPTK  180
GGPDDELSKI RKRIRYILNR MNYHQSFLEA YASEGWKNQS LEKIRPEKEL ERAKEEIVRC  240
KLRIREAFQN LDHLLTVGKL EESLFDSEGK ISSDDIVCAT CSLQEATLNN DIILCDGACD  300
RGFHQNCLNP PLLTKDIPEG EEGWLCPACD CKIDCIELIN ELQGTDLDIN DSWEKVFPEA  360
AAVAHGPMQN DVADLPSDDS EDDDFDPNIS EEHVAGHAEG SSEEDGDEGS DSDDSNFMTS  420
SDNSEHVKEK VKVDDLGLPS EDSEDDDYDP AGPDSDKDIE EKQDESDFTS DSDEFCAEIT  480
KSCSKDEVSS GPKVGGRTND LEGAPVRPNT SMSHSKDLEI DPDVILPSTK RQVQRLDYKK  540
LYDDTYGEAP SESSDGDEWS GKSTLKEDNE ERNEVDSFAR KSSRGTRAVH PDGFHGLVND  600
QHAGGLTSAG SNSKANKRHF GPVINERLNQ YFTTDQYPSR AVKESLAQEL GLTFHQVRMS  660
LS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	195	KIRKRIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	3e-77	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG056900.1