PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG056900.12

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 1160aa MW: 128864 Da PI: 4.5235

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG056900.12	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.8	4.9e-10	626	666	12	52
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 e+L+++F ++yps++ +e LA++lgLt qV WF R TRIDC1BG056900.12 626 NERLNQYFTTDQYPSRAVKESLAQELGLTFHQVNKWFESTR 666 589**********************************8766 PP
2	Homeobox	20.8	6.8e-07	1103	1135	13	45
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVk 45 ++L e F+ ++yps++ +e LA++lgLt rqV TRIDC1BG056900.12 1103 QRLHEQFKTDQYPSRAVKESLAQELGLTFRQVC 1135 6899***************************95 PP
3	PHD	39.3	1.4e-13	278	333	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ ++ +++++lCdg C++ fH++Cl+++l ++++peg wlC+ C++k TRIDC1BG056900.12 278 VCATCSLqeATLNNDIILCDGaCDRGFHQNCLNPPLLTKDIPEGeeGWLCPACDCK 333 599999854555******66*****************999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1160 aa Download sequence
RLAGRRRTLA RCWFIWCNYV QIHILLRLRS ARRQFSEAVF FLLLEYKIIS GRHQMDKSNT 60 SGCAEDTIET RSYANSSLNP EALKHQSFPF PYTSPSGERK NFKRAANRGR KGSRVLSSRT 120 YPLKSSESTV RVLRSRSVAD KSPSDSVQTP TEKAAKKPPS DSVDTLVKPA AKRIKRDRPT 180 KGGPDDELSK IRKRIRYILN RMNYHQSFLE AYASEGWKNQ SLEKIRPEKE LERAKEEIVR 240 CKLRIREAFQ NLDHLLTVGK LEESLFDSEG KISSDDIVCA TCSLQEATLN NDIILCDGAC 300 DRGFHQNCLN PPLLTKDIPE GEEGWLCPAC DCKIDCIELI NELQGTDLDI NDSWEKVFPE 360 AAAVAHGPMQ NDVADLPSDD SEDDDFDPNI SEEHVAGHAE GSSEEDGDEG SDSDDSNFMT 420 SSDNSEHVKE KVKVDDLGLP SEDSEDDDYD PAGPDSDKDI EEKQDESDFT SDSDEFCAEI 480 TKSCSKDEVS SGPKVGGRTN DLEGAPVRPN TSMSHSKDLE IDPDVILPST KRQVQRLDYK 540 KLYDDTYGEA PSESSDGDEW SGKSTLKEDN EERNEVDSFA RKSSRGTRAV HPDGFHGLVN 600 DQHAGGLTSA GSNSKANKRH FGPVINERLN QYFTTDQYPS RAVKESLAQE LGLTFHQVNK 660 WFESTRHARA AAMKNGTQLE KQSNSRKKKS SDATHMEVKD QPNACKEEGI RQHSPVKQDT 720 DGGQRTHVPP ESSQSYTKTS GLIGCPKSES RENHEKNTSS KYVGMPTDGS AEDQILELEP 780 EDEGSDSDDL NFVTRSGNSE PLKNREKIDD LGLPSAYSED DDYDSDEVIE MMQSSSDESN 840 FTTSSDNPED VKEKVDDLGL PSEDSEDDDY DPAGPGSDED IGKKQSSSEK SHSSDKSENR 900 KTKRKVDDLG LPSEDSEDDD YDPASPDSDK DIEEKQDESD FSSDSDDFCV EIAKSCCGQE 960 GVPSGAKVGA DRTDDLEGTT ICANAAISNL PSKDPEMDQY VVLPVSARQK VQSPDSKKLA 1020 AYGRAPSDSS YSEELSKKGT PEKDKGKESE AGSFVRQSNE FTPQRSQQSF HGSVNGQNAE 1080 ELLTPNGSST TGQKRQYGPI INQRLHEQFK TDQYPSRAVK ESLAQELGLT FRQVCTSFFH 1140 EFPCMYSCLG IEQNPHYGLC

Sequence ? help Back to Top

Protein Sequence Length: 1160 aa Download sequence

RLAGRRRTLA RCWFIWCNYV QIHILLRLRS ARRQFSEAVF FLLLEYKIIS GRHQMDKSNT  60
SGCAEDTIET RSYANSSLNP EALKHQSFPF PYTSPSGERK NFKRAANRGR KGSRVLSSRT  120
YPLKSSESTV RVLRSRSVAD KSPSDSVQTP TEKAAKKPPS DSVDTLVKPA AKRIKRDRPT  180
KGGPDDELSK IRKRIRYILN RMNYHQSFLE AYASEGWKNQ SLEKIRPEKE LERAKEEIVR  240
CKLRIREAFQ NLDHLLTVGK LEESLFDSEG KISSDDIVCA TCSLQEATLN NDIILCDGAC  300
DRGFHQNCLN PPLLTKDIPE GEEGWLCPAC DCKIDCIELI NELQGTDLDI NDSWEKVFPE  360
AAAVAHGPMQ NDVADLPSDD SEDDDFDPNI SEEHVAGHAE GSSEEDGDEG SDSDDSNFMT  420
SSDNSEHVKE KVKVDDLGLP SEDSEDDDYD PAGPDSDKDI EEKQDESDFT SDSDEFCAEI  480
TKSCSKDEVS SGPKVGGRTN DLEGAPVRPN TSMSHSKDLE IDPDVILPST KRQVQRLDYK  540
KLYDDTYGEA PSESSDGDEW SGKSTLKEDN EERNEVDSFA RKSSRGTRAV HPDGFHGLVN  600
DQHAGGLTSA GSNSKANKRH FGPVINERLN QYFTTDQYPS RAVKESLAQE LGLTFHQVNK  660
WFESTRHARA AAMKNGTQLE KQSNSRKKKS SDATHMEVKD QPNACKEEGI RQHSPVKQDT  720
DGGQRTHVPP ESSQSYTKTS GLIGCPKSES RENHEKNTSS KYVGMPTDGS AEDQILELEP  780
EDEGSDSDDL NFVTRSGNSE PLKNREKIDD LGLPSAYSED DDYDSDEVIE MMQSSSDESN  840
FTTSSDNPED VKEKVDDLGL PSEDSEDDDY DPAGPGSDED IGKKQSSSEK SHSSDKSENR  900
KTKRKVDDLG LPSEDSEDDD YDPASPDSDK DIEEKQDESD FSSDSDDFCV EIAKSCCGQE  960
GVPSGAKVGA DRTDDLEGTT ICANAAISNL PSKDPEMDQY VVLPVSARQK VQSPDSKKLA  1020
AYGRAPSDSS YSEELSKKGT PEKDKGKESE AGSFVRQSNE FTPQRSQQSF HGSVNGQNAE  1080
ELLTPNGSST TGQKRQYGPI INQRLHEQFK TDQYPSRAVK ESLAQELGLT FRQVCTSFFH  1140
EFPCMYSCLG IEQNPHYGLC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	196	KIRKRIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	9e-75	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG056900.12