PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG062600.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

RAV

Protein Properties

Length: 363aa MW: 38994 Da PI: 9.9295

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG062600.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.6	3.1e-13	61	109	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f + eAa+a++aa+++++g TRIDC1BG062600.2 61 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDAAAQRFRG 109 89**9888.8*****......44******99***********98 PP
2	B3	95.2	4.5e-30	180	280	1	90
EEEE-..-HHHHTT-EE--HHH.HTT............---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+ tpsdv+k++rlv+pk++ae+h +++ l + d g+ W+++++y+++s++yvltkGW++Fvk++gL +gD TRIDC1BG062600.2 180 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpaagaavP---GecKGVLLNFDDAAGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDA 269 89*************************8888776652...144889***************************************** PP EEEEE-SSSEE CS B3 80 vvFkldgrsef 90 vvF+++ + + TRIDC1BG062600.2 270 VVFYRSASGNN 280 **7654444 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
RSCLVDDVSS GSSTGNKASP VPAAPATKPL QRVGSGASAV MDAPEPGAEA DSGRGGRLPS 60 SKYKGVVPQP NGRWGAQIYE RHQRVWLGTF TGEAEAARAY DAAAQRFRGR DAVTNFRPLA 120 ESDPDDAAEL RFLAALSKAE VVDMLRKHTY PDELAQSLPP ASSPSSPAAP SPAARREHLF 180 DKTVTPSDVG KLNRLVIPKQ HAEKHFPLQL PAAGAAVPGE CKGVLLNFDD AAGKLWRFRY 240 SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV VFYRSASGNN QLFIDCKLRS KTTTTTTAFV 300 NVAAAAPSPA PVTRTVRLFG VDLLTAPAPE HEEYGMAKTN KRSMDASVEA PTPAHAVWKK 360 RCV

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

RSCLVDDVSS GSSTGNKASP VPAAPATKPL QRVGSGASAV MDAPEPGAEA DSGRGGRLPS  60
SKYKGVVPQP NGRWGAQIYE RHQRVWLGTF TGEAEAARAY DAAAQRFRGR DAVTNFRPLA  120
ESDPDDAAEL RFLAALSKAE VVDMLRKHTY PDELAQSLPP ASSPSSPAAP SPAARREHLF  180
DKTVTPSDVG KLNRLVIPKQ HAEKHFPLQL PAAGAAVPGE CKGVLLNFDD AAGKLWRFRY  240
SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV VFYRSASGNN QLFIDCKLRS KTTTTTTAFV  300
NVAAAAPSPA PVTRTVRLFG VDLLTAPAPE HEEYGMAKTN KRSMDASVEA PTPAHAVWKK  360
RCV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-101	RAV family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG062600.2