PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG062620.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

RAV

Protein Properties

Length: 389aa MW: 41711 Da PI: 9.9453

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG062620.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.5	3.4e-13	65	113	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f + eAa+a++aa+++++g TRIDC1BG062620.2 65 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDAAAQRFRG 113 89**9888.8*****......44******99***********98 PP
2	B3	90.8	1.1e-28	200	304	1	94
EEEE-..-HHHHTT-EE--HHH.HTT............---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+ tpsdv+k++rlv+pk++ae+h +++ l + d g+ W+++++y+++s++yvltkGW++Fvk++gL +gD TRIDC1BG062620.2 200 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsasavvP---GecKGMLLNFDDAVGKMWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDA 289 89*************************8877776652...144899***************************************** PP EEEEE-SSSEE..EE CS B3 80 vvFkldgrsefelvv 94 v F+++ + + +l+v TRIDC1BG062620.2 290 VGFYRSASGNNQLFV 304 **87655555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MDSARSCLVD DVSSGASTGK KASPAPAAPA TMPLQRVGSG ASAVMDAPEP GAEADSARGG 60 RLPSSKYKGV VPQPNGRWGA QIYERHQRVW LGTFTGEAEA ARAYDAAAQR FRGRDAVTNF 120 RPLAESDPGD AAELRFLAAR SKAEVVDMLR KHIYPDELAQ YKRAFLASAA SSPTSSSSAP 180 ASSAPSAAAP SAAARREHLF DKTVTPSDVG KLNRLVIPKQ HAEKHFPLQL PSASAVVPGE 240 CKGMLLNFDD AVGKMWRFRY SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV GFYRSASGNN 300 QLFVDCKIRS NSTTTTTTTF LNAVAAPSPA PVTRTVRLFG VDLLAAPAPE HEEYGMAKTN 360 KRSMDASVEA PTPAHAVWKK RCVDFALTY

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MDSARSCLVD DVSSGASTGK KASPAPAAPA TMPLQRVGSG ASAVMDAPEP GAEADSARGG  60
RLPSSKYKGV VPQPNGRWGA QIYERHQRVW LGTFTGEAEA ARAYDAAAQR FRGRDAVTNF  120
RPLAESDPGD AAELRFLAAR SKAEVVDMLR KHIYPDELAQ YKRAFLASAA SSPTSSSSAP  180
ASSAPSAAAP SAAARREHLF DKTVTPSDVG KLNRLVIPKQ HAEKHFPLQL PSASAVVPGE  240
CKGMLLNFDD AVGKMWRFRY SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV GFYRSASGNN  300
QLFVDCKIRS NSTTTTTTTF LNAVAAPSPA PVTRTVRLFG VDLLAAPAPE HEEYGMAKTN  360
KRSMDASVEA PTPAHAVWKK RCVDFALTY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-104	RAV family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG062620.2