PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG062640.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

RAV

Protein Properties

Length: 314aa MW: 33845.1 Da PI: 10.2386

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG062640.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.9	2.5e-13	65	113	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f + eAa+a++aa+++++g TRIDC1BG062640.3 65 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDAAAQRFRG 113 89**9888.8*****......44******99***********98 PP
2	B3	94.1	9.5e-30	180	280	1	90
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+ tpsdv+k++rlv+pk++ae+h +g + +++ l + d g++W+++++y+++s++yvltkGW++Fvk++gL +gD v TRIDC1BG062640.3 180 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsagaavSG-ECKGMLLNFDDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVG 271 89*************************88888777532.34899******************************************* PP EEE-SSSEE CS B3 82 Fkldgrsef 90 F+++ + + TRIDC1BG062640.3 272 FYRSASGNN 280 7654444 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MDSARSCLVD DVSSGASTGK KASPSPAAAA TKPLQRVGSG ASAVMDAPEP GAEADSGRVG 60 KLPSSKYKGV VPQPNGRWGA QIYERHQRVW LGTFTGEAEA ARAYDAAAQR FRGRDAVTNF 120 RPLAESDPED AAELRFLAAR SKAEVVDMLR KHTYPDELAQ YKRPSSASAP SPAARREHLF 180 DKTVTPSDVG KLNRLVIPKQ HAEKHFPLQL PSAGAAVSGE CKGMLLNFDD AAGKVWRFRY 240 SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV GFYRSASGNN QLFIECKLRS KTKTTTTTTL 300 TKATAATPSP APVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-99	RAV family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG062640.3