PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG074670.10

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 990aa MW: 110633 Da PI: 4.684

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG074670.10	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27	7.9e-09	469	491	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+ ++ GtC yG++C+F+H+p TRIDC1BG074670.10 469 NCPSYMSKGTCTYGPSCHFNHPP 491 7********************96 PP
2	zf-CCCH	35.6	1.6e-11	529	551	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG C+yG +C+F+H+ TRIDC1BG074670.10 529 RNCDYYMRTGACRYGKNCHFNHP 551 79********************9 PP
3	zf-CCCH	28	3.8e-09	729	754	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C+f++r+G Ck+ + C+++H++ TRIDC1BG074670.10 729 GKPDCPFYMRFGDCKFASACNYHHPK 754 7899********************96 PP
4	zf-CCCH	27.6	5.1e-09	763	788	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f ++ G+Ck ++CkF H++ TRIDC1BG074670.10 763 DEPECPFLMKRGYCKLRAQCKFYHPE 788 689*********************96 PP
5	zf-CCCH	19.9	1.3e-06	827	853	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+++++G Cky + C F+H++ TRIDC1BG074670.10 827 PGQPECRYYLQFGKCKYLSACIFHHPK 853 5789*********************96 PP
6	zf-CCCH	29.7	1.1e-09	865	891	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++ G C++G+ C F H++ TRIDC1BG074670.10 865 PGMPDCPFYMKAGKCQFGSACEFRHPK 891 5789*********************96 PP
7	zf-CCCH	19.3	2e-06	935	960	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r G+Ck+ +Ck++H+ TRIDC1BG074670.10 935 PGEPECNHYMRQGYCKFQMNCKYHHP 960 5799*********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 990 aa Download sequence
LDDDDQEKKP LGQCTSTTSS YCEELRTTTM ETDVAKDDQE QVVEQQDATQ PRDEDTAAEG 60 QETPGAHQPG STENADDAVQ VQEEGETADA TAVHDHDKAV EQCTTADDLG TTMENDVAKD 120 DQEVLEQGVI DQGDASTIDA VKDHEVLLLG AVEGTRATTD GIAAVEDQGK NVEQCTTYSD 180 LGTTMKNDDA VDDKQVVEEG VVDLTMDDDD SVKHHKQQGI IDGTDDIAVE KQEKVLEQCS 240 RATTDQYTVR EKEMVVEQGV IDPKYMDLAT EDQVKLSIID DHGTVPMDNI VVKDQDKAVV 300 QYASDAIVTI KDESPVEEHD TVGNQGVIDK NGRTKDDIDV EGHGYVNEQV IVDNWGTSSD 360 ATALEGQKNE AEPRIGDEQI AGKDMDGVHA EGNMLEQRTS DKQGATQSDF TVDKHKDVAE 420 CVRHEWGAPE DDLAMDRTAY QGTGDWGIVS KEKYTLPARR YPQKPRKLNC PSYMSKGTCT 480 YGPSCHFNHP PQLKSRSDES WRPSERRNHG AAEILELNRL GLPIREGARN CDYYMRTGAC 540 RYGKNCHFNH PDHVIDAQFS PPTGWEDNAL QMEKSSDHTL DETSRMKKSS DGATFDDRSH 600 MKKSSDDATL DDRSHLKKPS DGAIVDDTSY SKKSSDHENS SSSGVLPPSI FRMLLPPQKV 660 LPGTEGKAKK KSDWSSDDSD GCCSADSSDG PLCKQGEHVD YPERPGRPEY HRPKQSKYKE 720 EVNYPERPGK PDCPFYMRFG DCKFASACNY HHPKDKYPAG RPDEPECPFL MKRGYCKLRA 780 QCKFYHPEAS SPTDAKRSVT TDEHHPSTRT TLQDYMLPQQ PQYPERPGQP ECRYYLQFGK 840 CKYLSACIFH HPKDRLAAHS DQIGPGMPDC PFYMKAGKCQ FGSACEFRHP KDIHSSSTAE 900 EAFDKRSGSG AYDSLTRSDN GVEQQEESIM YPERPGEPEC NHYMRQGYCK FQMNCKYHHP 960 GDREVIRSDH LSKAGTRWLP HECYQQKALS

Sequence ? help Back to Top

Protein Sequence Length: 990 aa Download sequence

LDDDDQEKKP LGQCTSTTSS YCEELRTTTM ETDVAKDDQE QVVEQQDATQ PRDEDTAAEG  60
QETPGAHQPG STENADDAVQ VQEEGETADA TAVHDHDKAV EQCTTADDLG TTMENDVAKD  120
DQEVLEQGVI DQGDASTIDA VKDHEVLLLG AVEGTRATTD GIAAVEDQGK NVEQCTTYSD  180
LGTTMKNDDA VDDKQVVEEG VVDLTMDDDD SVKHHKQQGI IDGTDDIAVE KQEKVLEQCS  240
RATTDQYTVR EKEMVVEQGV IDPKYMDLAT EDQVKLSIID DHGTVPMDNI VVKDQDKAVV  300
QYASDAIVTI KDESPVEEHD TVGNQGVIDK NGRTKDDIDV EGHGYVNEQV IVDNWGTSSD  360
ATALEGQKNE AEPRIGDEQI AGKDMDGVHA EGNMLEQRTS DKQGATQSDF TVDKHKDVAE  420
CVRHEWGAPE DDLAMDRTAY QGTGDWGIVS KEKYTLPARR YPQKPRKLNC PSYMSKGTCT  480
YGPSCHFNHP PQLKSRSDES WRPSERRNHG AAEILELNRL GLPIREGARN CDYYMRTGAC  540
RYGKNCHFNH PDHVIDAQFS PPTGWEDNAL QMEKSSDHTL DETSRMKKSS DGATFDDRSH  600
MKKSSDDATL DDRSHLKKPS DGAIVDDTSY SKKSSDHENS SSSGVLPPSI FRMLLPPQKV  660
LPGTEGKAKK KSDWSSDDSD GCCSADSSDG PLCKQGEHVD YPERPGRPEY HRPKQSKYKE  720
EVNYPERPGK PDCPFYMRFG DCKFASACNY HHPKDKYPAG RPDEPECPFL MKRGYCKLRA  780
QCKFYHPEAS SPTDAKRSVT TDEHHPSTRT TLQDYMLPQQ PQYPERPGQP ECRYYLQFGK  840
CKYLSACIFH HPKDRLAAHS DQIGPGMPDC PFYMKAGKCQ FGSACEFRHP KDIHSSSTAE  900
EAFDKRSGSG AYDSLTRSDN GVEQQEESIM YPERPGEPEC NHYMRQGYCK FQMNCKYHHP  960
GDREVIRSDH LSKAGTRWLP HECYQQKALS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	2e-41	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG074670.10