PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2AG024050.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 729aa MW: 78699.5 Da PI: 6.7797

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2AG024050.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F r nL+ H r H TRIDC2AG024050.1 74 FVCEVCGKGFQRDQNLQLHRRGH 96 89******************988 PP
2	zf-C2H2	15.7	4.3e-05	153	174	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 Cp Cgk++ + +Lk H +t+ TRIDC2AG024050.1 153 ACPRCGKRYAVQADLKAHAKTC 174 6******************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence
RADKGQLEGC ELSGAAAAAP DRPGMPPNPT EPEQPEAAAT PAPPKKKRNL PGTPDPDAEV 60 IALSPGTLMA TNRFVCEVCG KGFQRDQNLQ LHRRGHNLPW RLRQRGPGAA PPRRRVYVCP 120 EPGCVHHSPA RALGDLTGIK KHFCRKHGEK RWACPRCGKR YAVQADLKAH AKTCGTREYR 180 CDCGTLFTRR DSFVTHRAFC GALVEETGRV LAVPAPPSPR PPDLEEVEEN VDKDKEKEEE 240 NVDKHKEKED EGDKGGEDEN ETSAVAEVDE PQHVEAAMEE PQPQRIPSSP SPTPPSPAPQ 300 EQQPMVAVVP NLDEPVVVVE PIVDIKQEEE DKRDEDVCFQ EADKYDVAEL EDSNLPDNDT 360 PMPPCFLPSP SDAIGTDGSS TSCGTVSSAS NSIAPATTTS TFAGLFASAT TSTTPQSRSL 420 RDLIGVDPTF LCLAIGTPSS LFPQTDASNP GNFAPPPAPH ISATALLQKA AEAGASQAGT 480 SFLKEFGLAS SSSSTPSRPP QGRFIESSST QSQQPQGRFI ESSSTQSQQP QGRFIESSST 540 ASQHNPGYLK TGSSRAAQHN PGYLKTGSSR AARHNPGYLK TGSSTAQHNF DYLKTGTSIT 600 RCHRSYLKGD SWIPHCHPSN CYLKEGSSTT RQHQICLKEG SLITLNHPIQ LKEGSSSTRH 660 HPIYLMEGSL IIRHQEGCLK ECTSMACHNP GYHKEGTSTT HRRPSYLRGE GSLIAIHSNG 720 TKGAIIITS

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence

RADKGQLEGC ELSGAAAAAP DRPGMPPNPT EPEQPEAAAT PAPPKKKRNL PGTPDPDAEV  60
IALSPGTLMA TNRFVCEVCG KGFQRDQNLQ LHRRGHNLPW RLRQRGPGAA PPRRRVYVCP  120
EPGCVHHSPA RALGDLTGIK KHFCRKHGEK RWACPRCGKR YAVQADLKAH AKTCGTREYR  180
CDCGTLFTRR DSFVTHRAFC GALVEETGRV LAVPAPPSPR PPDLEEVEEN VDKDKEKEEE  240
NVDKHKEKED EGDKGGEDEN ETSAVAEVDE PQHVEAAMEE PQPQRIPSSP SPTPPSPAPQ  300
EQQPMVAVVP NLDEPVVVVE PIVDIKQEEE DKRDEDVCFQ EADKYDVAEL EDSNLPDNDT  360
PMPPCFLPSP SDAIGTDGSS TSCGTVSSAS NSIAPATTTS TFAGLFASAT TSTTPQSRSL  420
RDLIGVDPTF LCLAIGTPSS LFPQTDASNP GNFAPPPAPH ISATALLQKA AEAGASQAGT  480
SFLKEFGLAS SSSSTPSRPP QGRFIESSST QSQQPQGRFI ESSSTQSQQP QGRFIESSST  540
ASQHNPGYLK TGSSRAAQHN PGYLKTGSSR AARHNPGYLK TGSSTAQHNF DYLKTGTSIT  600
RCHRSYLKGD SWIPHCHPSN CYLKEGSSTT RQHQICLKEG SLITLNHPIQ LKEGSSSTRH  660
HPIYLMEGSL IIRHQEGCLK ECTSMACHNP GYHKEGTSTT HRRPSYLRGE GSLIAIHSNG  720
TKGAIIITS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	4e-91	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC2AG024050.1