PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2AG024960.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 234aa MW: 24247.6 Da PI: 8.4092

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2AG024960.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.9	4.4e-30	17	118	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C++ Cvl+p++ +++q +++ +++k+FG++ ++++l+a+pe++r+++++sl+yeA r+ +Pv+Gavg++++++++l+ TRIDC2AG024960.1 17 SCNGCRVLRKGCNDACVLRPCLlwieaADAQGHATLFAAKFFGRAGLMSFLTAVPEQQRPAVFQSLLYEAAGRTINPVSGAVGLLWAGSWHLC 109 6*******************9998666778********************************************************* PP DUF260 89 qlkaelall 97 +++++++l+ TRIDC2AG024960.1 110 EAAVQTVLR 118 9998776 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MRGSERAAVS ASTSGMSCNG CRVLRKGCND ACVLRPCLLW IEAADAQGHA TLFAAKFFGR 60 AGLMSFLTAV PEQQRPAVFQ SLLYEAAGRT INPVSGAVGL LWAGSWHLCE AAVQTVLRGG 120 AIRPLPELAG GVPEGGVGGS DLFASSSRRA VVGCSTYSAA KRVTPRKTWA PEAASQHQEP 180 PCDLGLFLTP GSAAAAEGER RVRRAGTPSM SSDGSVTTSA GAGEKEPELL NLFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-63	LBD family protein

Link Out ? help Back to Top
Ensembl	TRIDC2AG024960.1