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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC2AG035320.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | C3H | ||||||||
| Protein Properties | Length: 180aa MW: 19504.5 Da PI: 11.5215 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 34.1 | 4.5e-11 | 99 | 124 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC+ f++ GtC+y +C+FaHg+
TRIDC2AG035320.1 99 FKTKLCCKFQA-GTCPYVTNCNFAHGM 124
69*********.*************95 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 180 aa Download sequence |
WTTPTPSISS RTPPVPKVGP TLRRLLAGTR GFGPPRTTIA SGTASRGLAG VAMAVTRTRR 60 SRIQGPAASS HCLARSPGAV GRRAAATRSK SCAIGKMFFK TKLCCKFQAG TCPYVTNCNF 120 AHGMEELRKP PPNWQEIVVA HEEVMEQRQE HQIPIMTSSN VVPGDSVSGR AYKGRHYKKF |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT1G32360.1 | 3e-36 | C3H family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC2AG035320.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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