PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC2BG025920.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26581.9 Da    PI: 9.2718
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC2BG025920.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.13.5e-311059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gklyeyss
  TRIDC2BG025920.1 10 RIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLYEYSS 59
                      8***********************************************96 PP
2K-box92.76.3e-31871721398
             K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       +++++  e+  Lk +++ Lq++qR+llGe+L++L+ keLqqLeqqL++slk+iRs+Kn+ll+e+i+elqkkek+l+++n  L+k l
  TRIDC2BG025920.1  87 NQANWGDEYGSLKIKLDALQKSQRQLLGEQLDPLTTKELQQLEQQLDSSLKHIRSRKNQLLFESISELQKKEKSLKDQNGVLQKHL 172
                       6789******************************************************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MGRGPVQLRR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLYEYSSQ  60
DSMDVILERY QRYSFEERAV LDPSIGNQAN WGDEYGSLKI KLDALQKSQR QLLGEQLDPL  120
TTKELQQLEQ QLDSSLKHIR SRKNQLLFES ISELQKKEKS LKDQNGVLQK HLVETEKEKN  180
NVLSNIHHQE QLNGATNINH QEQLNGATTS SPSPTPATAQ DSMATPNIGP YQSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-68MIKC_MADS family protein