PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG029060.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 223aa MW: 24173 Da PI: 10.2741

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG029060.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.5	1.1e-18	86	138	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+eq++ Le F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k TRIDC2BG029060.4 86 KRRLTDEQVHGLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 138 5689***********************************************99 PP
2	HD-ZIP_I/II	106.6	1.9e-34	85	174	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl++eqv+ LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k +E+++++Lk+a+da ++++ +v +L+e+l TRIDC2BG029060.4 85 KKRRLTDEQVHGLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLMEEEFAKLKHAHDAAILHKCHTYGQVLRLKERL 174 9*****************************************************************************999999999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
TQHNPPGLPS NLPTTPLLSS PQLPTASMDK QQVFGSSYVD MPFFAANGTA QGESRPRARR 60 RRRRAARCGR GDGDGGEMDG GGDLKKRRLT DEQVHGLELS FREERKLETG RKVHLAAELG 120 LDPKQVAVWF QNRRARHKSK LMEEEFAKLK HAHDAAILHK CHTYGQVLRL KERLGATEEE 180 VRRLRSAAGS HGASGDGGDA AGAVGACGGS PSSSFSTGTC QQH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	64	RPRARRRRRR
2	59	64	RRRRRR
3	59	67	RRRRRRAAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66700.1	4e-37	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG029060.4