PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG057890.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 401aa MW: 43912.8 Da PI: 12.5137

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG057890.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.8	3.3e-10	66	97	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg+WT+eEd++lv ++ +G g+W++ ++ g TRIDC2BG057890.1 66 RGPWTPEEDKILVAHIHSHGHGNWRALPKQAG 97 89************************999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
RGITQAGRQA SRAPSRLFSP LPQRGQRHRE RTPPHLHPSS SARTNSRGRG AVMGRAPCCE 60 KMGLKRGPWT PEEDKILVAH IHSHGHGNWR ALPKQAGESL PPSVSQTHLR RLPSRLGVQS 120 AQDPSLTSVV CAVSRPAAVR QELPAPVDQL PAAGHQARQL HRRGGAVNHP AAPAARQQMV 180 RDCRPAAGED GQRDQERVAH PPQEAARPQR AGAARGGQEA QEAGGGRAEA RRQGQDEEAR 240 RADRQGGARA VLARALRLVH GHRVDVHGLG GGGAARQLGQ LRVRLRVRQG GVLHLVRGVG 300 GVPDRRELLV GDAVHAAGRH QRRLHGAPRR VRQAHGRRRR RHGLLAQSVH GGRRRRRQQQ 360 RRARLTADLG RERALVSSLL PIDRSFFSLS TRAILLHRRD C

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

RGITQAGRQA SRAPSRLFSP LPQRGQRHRE RTPPHLHPSS SARTNSRGRG AVMGRAPCCE  60
KMGLKRGPWT PEEDKILVAH IHSHGHGNWR ALPKQAGESL PPSVSQTHLR RLPSRLGVQS  120
AQDPSLTSVV CAVSRPAAVR QELPAPVDQL PAAGHQARQL HRRGGAVNHP AAPAARQQMV  180
RDCRPAAGED GQRDQERVAH PPQEAARPQR AGAARGGQEA QEAGGGRAEA RRQGQDEEAR  240
RADRQGGARA VLARALRLVH GHRVDVHGLG GGGAARQLGQ LRVRLRVRQG GVLHLVRGVG  300
GVPDRRELLV GDAVHAAGRH QRRLHGAPRR VRQAHGRRRR RHGLLAQSVH GGRRRRRQQQ  360
RRARLTADLG RERALVSSLL PIDRSFFSLS TRAILLHRRD C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	337	357	RRRRRHGLLAQSVHGGRRRRR
2	338	358	RRRRRHGLLAQSVHGGRRRRR
3	339	359	RRRRRHGLLAQSVHGGRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	3e-23	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG057890.1