PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG074390.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 295aa MW: 30377.8 Da PI: 9.1819

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG074390.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.3	2.6e-08	86	111	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+Gd+C+FaHg+ TRIDC2BG074390.2 86 KTRMCTKYNTAEGCKFGDKCHFAHGE 111 89**********************96 PP
2	zf-CCCH	38.4	2e-12	261	286	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C +f++ GtC +G+rC+FaHg+ TRIDC2BG074390.2 261 YKTKICENFLK-GTCTFGERCHFAHGE 286 9********.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
PESANGGSAG GKRSRESESQ QTGLSSKSKP CTKFFSTVGC PFGEGCHFAH FVPGGYQAVS 60 KSHSLGHAAV SAASRAPADH AASGVKTRMC TKYNTAEGCK FGDKCHFAHG ERELGRPPSS 120 YMSQESSYAP PMGGRYGGRH EPPPPASMGP PAGNFGASST CKVSVDAALA GGIIGKGGVN 180 TKQICRITGV KLSIRDHESN PDLKNIELEG SFDQIKQAND MVRDLIASIS ASTPSKNPAG 240 TAAPAGRGGG GGGGPGGRSN YKTKICENFL KGTCTFGERC HFAHGETEQR KGAAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	6e-58	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG074390.2